View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21452_low_2 (Length: 375)
Name: NF21452_low_2
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21452_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 142 - 365
Target Start/End: Complemental strand, 18189174 - 18188951
Alignment:
| Q |
142 |
gcattccagaaccttctccgacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttcaacattctcctc |
241 |
Q |
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| T |
18189174 |
gcattccagaaccttctccgacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttcaacattctcctc |
18189075 |
T |
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| Q |
242 |
agggaccgagttttcgtccattggaatttctctgcaagaatcagcatccgcattcacttgctcaccacccacaacattttctcgaggcagagaatcttct |
341 |
Q |
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| T |
18189074 |
agggaccgagttttcgtccattggaatttctctgcaagaatcagcatccgcattcacttgctcaccacccacaacattttctcgaggcagagaatcttct |
18188975 |
T |
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| Q |
342 |
tcaaaccctaatttcaatttcttt |
365 |
Q |
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| T |
18188974 |
tgaaaccctaatttcaatttcttt |
18188951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 18189420 - 18189186
Alignment:
| Q |
1 |
tctctgcgagaaatttcaatacatcaaaaacattatacttctttttctcctcaaccctcccagattccaatccacttgcagtttctttctccgaaagact |
100 |
Q |
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| T |
18189420 |
tctctgcgagaaatttcaatacatcaaaaacattatacttctttttctcctcaaccctcccagattccaatccacttgcagtttctttctccgaaagact |
18189321 |
T |
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| Q |
101 |
tcggattgagtctggcagcacacgcagcaacggatcctcatgcattccagaaccttctccgacctcacaaattgaattgttcccctcattcaagttaaca |
200 |
Q |
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| T |
18189320 |
tcggattgagtctggtagcacacgcagcaacggatcctcatgcattccagaaccttctccgacctcacaacttgatctattcccctcaaccaatttaaca |
18189221 |
T |
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| Q |
201 |
tccccagcatttggagcaacttgagtttcaacatt |
235 |
Q |
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| T |
18189220 |
ttcccaccatcttgaacaacttgagtttcagcatt |
18189186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 52895044 - 52894989
Alignment:
| Q |
229 |
caacattctcctcagggaccgagttttcgtccattggaatttctctgcaagaatca |
284 |
Q |
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| T |
52895044 |
caacattttcctcttggacagggttttcgtccattggaatttctctgcaagaatca |
52894989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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