View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21452_low_4 (Length: 305)
Name: NF21452_low_4
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21452_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 104 - 299
Target Start/End: Original strand, 36306733 - 36306930
Alignment:
| Q |
104 |
atgcgcatcaaactacctaattgttgtgacacttttcttataaattaaagtacccc--atctactcactcactcgcacatcactattctttcctctaaac |
201 |
Q |
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| T |
36306733 |
atgcgcaccaaacaacctaattgttgtgacacttttcttataaattaaagtaccccccatctacccactccctcacacatcaatattctttcctctaaac |
36306832 |
T |
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| Q |
202 |
aaatattttccaaccctttccttcttcatcaatggccttttctcaagaagttgaatccccgtctccctctctggtttttcaagtacgaagaaaccaac |
299 |
Q |
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| T |
36306833 |
aaatattttccaaccctttccttcttcatcaatggccttttctcaagaagttgaatccccgtctccctctctggtttttcaagtacgaagaaaccaac |
36306930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 36306646 - 36306685
Alignment:
| Q |
17 |
tacaccaacagtatgatataataaatgtttgtcctaccac |
56 |
Q |
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| T |
36306646 |
tacaccaaccatatgatataataaatgtttgtcctaccac |
36306685 |
T |
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