View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21452_low_5 (Length: 274)

Name: NF21452_low_5
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21452_low_5
NF21452_low_5
[»] chr4 (5 HSPs)
chr4 (11-259)||(21513632-21513880)
chr4 (37-259)||(30948806-30949028)
chr4 (37-259)||(42267375-42267597)
chr4 (37-259)||(48700444-48700666)
chr4 (37-81)||(2000535-2000579)
[»] chr2 (2 HSPs)
chr2 (37-259)||(826951-827173)
chr2 (59-118)||(13842489-13842548)
[»] chr8 (1 HSPs)
chr8 (37-259)||(9442715-9442937)
[»] chr6 (1 HSPs)
chr6 (37-259)||(27877332-27877554)
[»] chr5 (2 HSPs)
chr5 (37-259)||(41719882-41720104)
chr5 (37-259)||(34353482-34353704)
[»] chr3 (2 HSPs)
chr3 (37-259)||(5821898-5822120)
chr3 (37-259)||(2815886-2816108)
[»] chr7 (1 HSPs)
chr7 (37-235)||(8137082-8137280)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 21513632 - 21513880
Alignment:
Q  11 agaatattctaaaatttacctcctgaaagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  21513632 agaatattctaaaatttacctcctgaaagcatgtataaattacttgtcatcttttctgcttttatcaccacaagattatctttcaccacttttaagattc 21513731  T
Q  111 cactttcatcatggatcttgcactcgagttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgca 210  Q
    |||||||||||||||||||||| | ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513732 cactttcatcatggatcttgcattagagttgacccaatttctttagcgacaataaattctttttgaacccatttacatgacttaccccatgtattttgca 21513831  T
Q  211 aacaataccatcatgtatctttaatgtaatagtgacgactccaacaatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513832 aacaataccatcatgtatctttaatgtaatagtgacgactccaacaatt 21513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 30948806 - 30949028
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  30948806 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcactgtggatcttacacccg 30948905  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  30948906 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 30949005  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  30949006 tgatagtaccgactccagcaatt 30949028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 42267597 - 42267375
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  42267597 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 42267498  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  42267497 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 42267398  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  42267397 tgatagtaccgactccagcaatt 42267375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 48700444 - 48700666
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  48700444 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 48700543  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  48700544 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 48700643  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  48700644 tgatagtaccgactccagcaatt 48700666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2000579 - 2000535
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccac 81  Q
    ||||||||||| |||| |||| | |||||||||||||||||||||    
T  2000579 aagcatgtatagattatttgtgagcttttctgctttcatcaccac 2000535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 827173 - 826951
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  827173 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattacctttcactactttcaagattccactttcagtgtggatcttacacccg 827074  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  827073 aggtcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 826974  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  826973 tgatagtaccgactccagcaatt 826951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 13842489 - 13842548
Alignment:
Q  59 atcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttca 118  Q
    ||||||| |||||||||||||| ||||||  ||||||| ||||||||||| |||||||||    
T  13842489 atcttttttgctttcatcaccagaagatttcctttcactactttcaagatgccactttca 13842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 9442715 - 9442937
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  9442715 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 9442814  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  9442815 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 9442914  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  9442915 tgatagtaccgactccagcaatt 9442937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 27877332 - 27877554
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  27877332 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 27877431  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  27877432 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 27877531  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  27877532 tgatagtaccgactccagcaatt 27877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 41720104 - 41719882
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  41720104 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 41720005  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  41720004 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 41719905  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  41719904 tgatagtaccgactccagcaatt 41719882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 34353704 - 34353482
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  34353704 aagcatgtatagattacttgtgatcttttctgcttttatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 34353605  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | || | |||||||||| |||||||||     
T  34353604 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaagagtaccatcatgcatctttaatc 34353505  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  34353504 tgatagtaccgactccagcaatt 34353482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 5821898 - 5822120
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  5821898 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 5821997  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  5821998 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 5822097  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  5822098 tgatagtaccgactccagcaatt 5822120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 2815886 - 2816108
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||   |||||| ||||| |||||||||||||||   |||||||| ||| ||    
T  2815886 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcttttcactactttaaagattccactttcagtgtggatcttacacccg 2815985  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 236  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| |||||| ||| |||||| |||||||||     
T  2815986 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcaaacagtacaatcatgcatctttaatc 2816085  T
Q  237 taatagtgacgactccaacaatt 259  Q
    | |||||  |||||||| |||||    
T  2816086 tgatagtaccgactccagcaatt 2816108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 8137082 - 8137280
Alignment:
Q  37 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 136  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||||   |||||| |||||||||||||||||||||   |||||||| ||| ||    
T  8137082 aagcatgtatagattacttgtgatattttcttctttcatcaccacaagattgcatttcactactttcaagattccactttcagtgtggatcttacacccg 8137181  T
Q  137 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaat 235  Q
    || | | |||||| | | |  |||||||||||||| || |||||||||| ||||  ||| || |||||||| | |||| |||||||||| |||||||||    
T  8137182 agatcatccaattgtccaacagacaataaattcttcttcaacccatttagatgatgtactccttgtatttttcgaacagtaccatcatgcatctttaat 8137280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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