View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21453_high_1 (Length: 462)
Name: NF21453_high_1
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 35612616 - 35613024
Alignment:
| Q |
20 |
aggcggtggagaatctgtcatgtgtcaagtagaggcgaatgagggtgcagaagaatgaaacatagagatgggttttggtgggtgggataaaaattgaatc |
119 |
Q |
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| T |
35612616 |
aggcggtggagaatctgtcatgtgtcaagtagaggcgaatgagggtgcagaagaatgaaacatagagatgggttttggtgggtgggataaaaattgaatc |
35612715 |
T |
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| Q |
120 |
tttatggatttgggaggagaatgttcttgtgatgggtgtagggtagaaaaatcttctgagtctggtggggggtgagaaaaagaagataagggtgtttgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35612716 |
tttatggatttgggaggagaatgttcttgtgatgggtgtagggtagaaaaatcttctgagtctggtggggggtgagaaaaagaatataagggtgtttgtt |
35612815 |
T |
|
| Q |
220 |
tgcacccttattttcttcagatgcatcatcatcatcatctactatgtcgattcaagttcagctgcatggtgattggtgagaatggaagtgagcagcagca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35612816 |
tgcacccttattttcttcagatgcatcatcatcatcatctactatgtcgattcaagttcagctgcatggtgattggtgagaatggaagtaagcagcagca |
35612915 |
T |
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| Q |
320 |
agtagcaacactatgggagggaagcggagcttgggttgagggaggagagttctctgttgttggtcgtaaacgaagaaagataaaattaacttttgatccc |
419 |
Q |
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| T |
35612916 |
agtagtaacactatgggaggaaagcggagcttgggttgagggaggagagttctctgttgttggtggtaaacgaagaaagagaaaattaacttttgatccc |
35613015 |
T |
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| Q |
420 |
caattttac |
428 |
Q |
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| T |
35613016 |
caattttac |
35613024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 27208172 - 27208309
Alignment:
| Q |
20 |
aggcggtggagaatctgtcatgtgtcaagtagaggcgaatgagggtgcagaagaatgaaacatagagatgggttttggtgggtgggataaaaattgaatc |
119 |
Q |
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||||||||||||||||| || | |||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
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| T |
27208172 |
aggcggtggagaatctgccacatttcaagtagagactaatgagagtgtagaagaatgaaacatagagatgggttttggtgggtgggatcaaaatcggatc |
27208271 |
T |
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| Q |
120 |
tttatggatttgggaggagaatgttcttgtgatgggtgtag |
160 |
Q |
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|||||||| |||||||||||| | ||||||||||||||| |
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| T |
27208272 |
tttatggagttgggaggagaa---ttttgtgatgggtgtag |
27208309 |
T |
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