View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21453_low_11 (Length: 257)
Name: NF21453_low_11
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34451225 - 34450983
Alignment:
| Q |
1 |
cacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34451225 |
cacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgttt |
34451126 |
T |
|
| Q |
101 |
gggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34451125 |
gggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcc |
34451026 |
T |
|
| Q |
201 |
cttcacttccttgcattagaatttcgtttgcttaggaaaaaag |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34451025 |
cttcacttccttgcattagaatttcgtttgcttaggaaaaaag |
34450983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 34475757 - 34475533
Alignment:
| Q |
9 |
caaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatat |
108 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||||||||||| | |||| ||||| || ||||||||||||| |||||||||||||||||||||| |
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| T |
34475757 |
caaatgcaaaaagaggatgttaggaagatttttcaatcttcaagcagtaatatctcacagcagctaaacttcattgattcattgcaacgtttgggaatat |
34475658 |
T |
|
| Q |
109 |
cttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcactt |
208 |
Q |
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| T |
34475657 |
cttatcattttgaacttgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaataaccacagaagaaggttcccttcactt |
34475558 |
T |
|
| Q |
209 |
ccttgcattagaatttcgtttgctt |
233 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
34475557 |
ccttgcattagcatttcgtttgctt |
34475533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 34488009 - 34487778
Alignment:
| Q |
10 |
aaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatc |
109 |
Q |
| |
|
||||| |||| || ||||||| |||||| |||| || |||||| ||||||| | |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
34488009 |
aaatggaaaaagatgaagtgaagaagatgtttctattttcaaggaatgatagtgaacaaaaccttaacttcattgactcattgcaacgtttgggaatatc |
34487910 |
T |
|
| Q |
110 |
ttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcacttc |
209 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || || |||||||||||||||||||||||||| |||||||||||| |
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| T |
34487909 |
ttatcattttgaacgtgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaataaccacaaaagaaggctcccttcacttc |
34487810 |
T |
|
| Q |
210 |
cttgcattagaatttcgtttgcttaggaaaaa |
241 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| |
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|
| T |
34487809 |
cttgcattagcatttcgtttgcttaggcaaaa |
34487778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 34461996 - 34461755
Alignment:
| Q |
2 |
acaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttg |
101 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||| |
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|
| T |
34461996 |
acaagtacaaatgcaaaaagaggaagtgaagaaacttttactatcttcaaggaatgatatggcacaaatactaaacctcattgactcattgcaacgtttg |
34461897 |
T |
|
| Q |
102 |
ggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttccc |
201 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| | | | ||||||||||| ||| || |||||||| || |
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| T |
34461896 |
ggaatatcttatcaatttgaacatgaaattgatgaagcgttagaacaaattcacaacaattttagtgacaataaggaaatgacctcagaagaaggtgacc |
34461797 |
T |
|
| Q |
202 |
ttcacttccttgcattagaatttcgtttgcttaggaaaaaag |
243 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||| |||||| |
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|
| T |
34461796 |
ttcactttcttgcgttagtatttcgtttgcttaggcaaaaag |
34461755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 1595373 - 1595245
Alignment:
| Q |
9 |
caaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatat |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
1595373 |
caaatacaaaaagaggaagtgaggaagatttttcaatcttcaagcaatagtatctcacaaaaactaaacatcattgactcattgcaacgtttgggaatat |
1595274 |
T |
|
| Q |
109 |
cttatcattttgaacgtgaaattgatgaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
1595273 |
cttatcattttgaacgtgaaattgatgaa |
1595245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 6128584 - 6128814
Alignment:
| Q |
2 |
acaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatctt-caagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgttt |
100 |
Q |
| |
|
|||||| ||||||| ||| || ||||| | ||||||||||| ||||| |||| |||||| |||| ||| | ||||||| |||||||||||||| ||||| |
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|
| T |
6128584 |
acaagtacaaatgccaaaagaagaagtaaagaagatttttctatcttgcaag-aatgatgtttcccaacaactaaacttgattgactcattgcatcgttt |
6128682 |
T |
|
| Q |
101 |
gggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | |||||| ||| || || ||||| ||||||||||||||||| || |||||| | |
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|
| T |
6128683 |
gggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaataaggaaataaccactaatgaaggtggc |
6128782 |
T |
|
| Q |
201 |
cttcacttccttgcattagaatttcgtttgct |
232 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||| |
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|
| T |
6128783 |
cttcactttcttgcgttagcatttcgtttgct |
6128814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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