View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21453_low_12 (Length: 256)
Name: NF21453_low_12
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 41288678 - 41288452
Alignment:
| Q |
16 |
ctctctactataagtacttagaatgcaatgtaggtgatggaagatttacctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagcaacaa |
115 |
Q |
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| T |
41288678 |
ctctctactataggtacttagaatgcaatgtaggtgatggaagatt-acctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagcaacaa |
41288580 |
T |
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| Q |
116 |
gcttagcaaagaaaagacacaaagcaaaagtaataacccctggtatcatacaagcttcaagtaacccaatactcttccctctcccatccccaccatttcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
41288579 |
gcttagcaaagaaaagacacaaagcaaaagtaataacccctggtatcatacaagcttcaagtaacccaatactcttccctctcccatcaccaccctttcc |
41288480 |
T |
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| Q |
216 |
acttccactctttctctctccttcaacc |
243 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
41288479 |
acttccactctccctctctccttcaacc |
41288452 |
T |
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