View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21453_low_4 (Length: 361)
Name: NF21453_low_4
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 44379484 - 44379816
Alignment:
| Q |
11 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
110 |
Q |
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| T |
44379484 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
44379583 |
T |
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| Q |
111 |
tcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
210 |
Q |
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| T |
44379584 |
tcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
44379683 |
T |
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| Q |
211 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379684 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
44379783 |
T |
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| Q |
311 |
cattgataagaacaaactcattcctgttatgtg |
343 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44379784 |
cattgataagaacaaactcattcctgttatgtg |
44379816 |
T |
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