View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21453_low_6 (Length: 350)
Name: NF21453_low_6
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 42408576 - 42408253
Alignment:
| Q |
11 |
cagagagaatagagaacaaaacaacaaagacaactagggtttcattagaatggcaaaagttcaaaacacaaatgttactcaggatatatagtaaa--tac |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||| |||||| | ||||||||||||| |||| | || ||||| |||||| || |
|
|
| T |
42408576 |
cagagagaagagagaacaaaacaacaaagacagctagagttttattagatcgacaaaagttcaaaatacaa-------taagaatataaagtaaaaatat |
42408484 |
T |
|
| Q |
109 |
agagagactaaactactcttagctcaattataacaaaaggttcaataacctattatctaatggtacatgattaaatacaaaaaatgca--------gtaa |
200 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||| |
|
|
| T |
42408483 |
aaagagactaaactacccttagctcaattataacaaaaggttcaataacctattatcaaatggtacatgattaaatacaagaaatgtaaatttttagtaa |
42408384 |
T |
|
| Q |
201 |
ctaaacatatttaattaactcaatttttaacttcnnnnnnncttattgtgcttcagaaggattccatgcagtttggagagatggaatggttcacagagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42408383 |
ctaaacatatttaattaactcaatttttaacttctttttttcttattgtgcttcagaaggattccatgcagtttggagagatggaatggttcacagagga |
42408284 |
T |
|
| Q |
301 |
gggtctttttggtgatgacttcactcaagaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42408283 |
gggtctttttggtgatgacttcactcaagaa |
42408253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 5265131 - 5265167
Alignment:
| Q |
123 |
actcttagctcaattataacaaaaggttcaataacct |
159 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5265131 |
actcttagctcaattataacaaaaggctcaataacct |
5265167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University