View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21453_low_7 (Length: 301)

Name: NF21453_low_7
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21453_low_7
NF21453_low_7
[»] chr3 (1 HSPs)
chr3 (14-301)||(38919408-38919695)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 38919408 - 38919695
Alignment:
Q  14 atatttcgggatttgaccctagaagtggtatcgccaaagaaaatatagtctgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919408 atatttcgggatttgaccctagaagtggtatcgccaaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaa 38919507  T
Q  114 atatattaattttaatcctacacgcgttgaggctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919508 atatattaattttaatcctacacgcgttgaggctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactat 38919607  T
Q  214 ggtgtggttcatgcggtgaatttgcgccaaaaaatggaaccatcattacctttagaatcgtttggtaactatttgcgatttacaataa 301  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38919608 ggtgtggttcatgcggtgaatttgcgccaaaaaatggaaccaccattacctttagaatcgtttggtaactatttgcgatttacaataa 38919695  T

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