View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21453_low_8 (Length: 291)

Name: NF21453_low_8
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21453_low_8
NF21453_low_8
[»] chr7 (11 HSPs)
chr7 (13-130)||(26241969-26242086)
chr7 (13-104)||(26297043-26297134)
chr7 (37-104)||(26178681-26178748)
chr7 (13-111)||(26154794-26154892)
chr7 (20-98)||(26184876-26184954)
chr7 (13-130)||(26250408-26250534)
chr7 (37-95)||(19104029-19104087)
chr7 (13-78)||(26128191-26128256)
chr7 (20-95)||(26082337-26082412)
chr7 (20-95)||(26106124-26106199)
chr7 (13-81)||(26301432-26301500)
[»] chr4 (1 HSPs)
chr4 (21-94)||(44902849-44902922)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 26242086 - 26241969
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttctattactgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  26242086 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgagattccattgttgcttggttctattactag 26241987  T
Q  113 gaaagttgttatttaagg 130  Q
    || | ||| |||||||||    
T  26241986 gagaattgatatttaagg 26241969  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 26297134 - 26297043
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttct 104  Q
    ||||||||||||||| |||  || ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26297134 catagggttcatatgaccagcagatggatatggaagaaagacaacatgaagtttgttattggattgttgagactccattgttgcttggttct 26297043  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 26178748 - 26178681
Alignment:
Q  37 tggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttct 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26178748 tggaaatggaagaaaaacaacatgaagtttgttatgggattgttgagactccattgttgcttggttct 26178681  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 26154892 - 26154794
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttctattactg 111  Q
    |||||| ||||||||||||  |  ||||| ||||||||||   |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26154892 cataggattcatatggccaggacttggatgtggaagaaaagttacatgaagttggttatgggattgttgagactccattgttgcttggttctattactg 26154794  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 26184954 - 26184876
Alignment:
Q  20 ttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgctt 98  Q
    ||||||||||||  || ||||||||||| |||||  |||||||||||||||||||||| |||||| |||||||||||||    
T  26184954 ttcatatggccaggagttggatatggaacaaaaattacatgaagtttgttatgggattattgggagtccattgttgctt 26184876  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 26250534 - 26250408
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgtt---------gggactccattgttgcttggttc 103  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||| ||||| ||||||||         | || ||||||||||||||||||    
T  26250534 catagggttcatatgaccagcagatggatatggaagaaaaacaacatgaagttggttattggattgttgagattgaggagaatccattgttgcttggttc 26250435  T
Q  104 tattactgggaaagttgttatttaagg 130  Q
    |||||||  || ||||| |||||||||    
T  26250434 tattactaagagagttgatatttaagg 26250408  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 19104029 - 19104087
Alignment:
Q  37 tggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 95  Q
    ||||||||||||||||   |||||||||| ||||||||||||||| || ||||||||||    
T  19104029 tggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 19104087  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26128256 - 26128191
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattg 78  Q
    |||||| ||||||||||||  |  |||||||| |||||||||||||||||||| ||||||| ||||    
T  26128256 cataggattcatatggccaggacttggatatgaaagaaaaacaacatgaagttggttatggaattg 26128191  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 26082412 - 26082337
Alignment:
Q  20 ttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 95  Q
    ||||||||||||  || ||||||||||| |||||  |  ||||||| |||||| |||||||| |||||||||||||    
T  26082412 ttcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttg 26082337  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 26106199 - 26106124
Alignment:
Q  20 ttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 95  Q
    ||||||||||||  || ||||||||||| |||||  |  ||||||| |||||| |||||||| |||||||||||||    
T  26106199 ttcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttg 26106124  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 26301500 - 26301432
Alignment:
Q  13 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttg 81  Q
    |||||| |||||||| |||  || |||| ||||||||||||  |||||||||| ||||| |||||||||    
T  26301500 cataggattcatatgaccaggagttggaaatggaagaaaaattacatgaagttggttattggattgttg 26301432  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 44902922 - 44902849
Alignment:
Q  21 tcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgtt 94  Q
    |||||||||||  || |||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||||    
T  44902922 tcatatggccaggagttggatatggaagaaaaactacatgaagttggttattggattgttgagaatccattgtt 44902849  T

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