View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21453_low_9 (Length: 270)
Name: NF21453_low_9
Description: NF21453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21453_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 19602732 - 19602879
Alignment:
| Q |
10 |
ataatactgtattcgtgcagtgtttccatcgaatcatcacaatgtcttctccgagtagtgttcatcagttccataagtcacaatgttttttcaaagtcat |
109 |
Q |
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| T |
19602732 |
ataataatgtattcatgcagtgtttccatcgaatcatcacaatgtcttctccgagtagtgttcatcagttccataagtcacaatgttttttcaaagtcat |
19602831 |
T |
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| Q |
110 |
cgtcgagaaaacccttaaaaagaaagagattgtaagtgcatgttaatc |
157 |
Q |
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| T |
19602832 |
cgtcgagaaaacccttaaaaagaaagagattgtaagtgcatgttaatc |
19602879 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 19602942 - 19602972
Alignment:
| Q |
220 |
gtgaatctaaaatgtttgcaatgtaacagat |
250 |
Q |
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| T |
19602942 |
gtgaatctaaaatgtttgcaatgtaacagat |
19602972 |
T |
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