View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21454_low_2 (Length: 249)

Name: NF21454_low_2
Description: NF21454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21454_low_2
NF21454_low_2
[»] chr5 (6 HSPs)
chr5 (1-230)||(18964736-18964965)
chr5 (87-172)||(29642352-29642437)
chr5 (87-208)||(29647633-29647754)
chr5 (87-171)||(29597544-29597628)
chr5 (85-159)||(24330889-24330963)
chr5 (114-159)||(23086788-23086833)
[»] chr7 (50 HSPs)
chr7 (8-168)||(14076675-14076822)
chr7 (8-168)||(14386703-14386850)
chr7 (96-221)||(19604464-19604589)
chr7 (83-171)||(29874505-29874593)
chr7 (85-212)||(19344565-19344692)
chr7 (78-159)||(660830-660911)
chr7 (83-166)||(18514775-18514858)
chr7 (89-196)||(22100462-22100569)
chr7 (78-203)||(22080830-22080955)
chr7 (83-165)||(29859454-29859536)
chr7 (83-171)||(20352089-20352177)
chr7 (83-171)||(29867230-29867318)
chr7 (83-149)||(6864795-6864861)
chr7 (89-171)||(22063636-22063718)
chr7 (85-154)||(1985945-1986014)
chr7 (78-203)||(22070073-22070198)
chr7 (102-159)||(29445663-29445720)
chr7 (77-159)||(29454085-29454167)
chr7 (113-174)||(20338915-20338976)
chr7 (84-156)||(12819905-12819977)
chr7 (94-202)||(13416910-13417018)
chr7 (83-159)||(20058045-20058121)
chr7 (83-171)||(20374491-20374579)
chr7 (84-156)||(24002208-24002280)
chr7 (83-159)||(29476328-29476404)
chr7 (83-171)||(29881250-29881338)
chr7 (118-165)||(9807824-9807871)
chr7 (101-208)||(19597661-19597768)
chr7 (102-172)||(22021385-22021455)
chr7 (83-156)||(20133305-20133378)
chr7 (83-156)||(20140806-20140879)
chr7 (84-156)||(19351058-19351130)
chr7 (126-170)||(19637248-19637292)
chr7 (86-162)||(19645621-19645697)
chr7 (84-156)||(24010392-24010464)
chr7 (96-156)||(29106823-29106883)
chr7 (85-156)||(15443973-15444044)
chr7 (83-166)||(19357909-19357992)
chr7 (83-158)||(24385208-24385283)
chr7 (85-172)||(36260246-36260333)
chr7 (96-166)||(18952906-18952976)
chr7 (96-166)||(18982953-18983023)
chr7 (96-166)||(18997599-18997669)
chr7 (101-143)||(19374778-19374820)
chr7 (105-159)||(22028634-22028688)
chr7 (101-159)||(29899380-29899438)
chr7 (85-163)||(46769373-46769451)
chr7 (78-170)||(19325968-19326060)
chr7 (111-159)||(21218724-21218772)
chr7 (83-159)||(36255372-36255448)
[»] chr6 (7 HSPs)
chr6 (8-154)||(17369675-17369818)
chr6 (78-217)||(20770598-20770737)
chr6 (85-217)||(6921340-6921472)
chr6 (85-217)||(6947870-6948002)
chr6 (101-217)||(6954525-6954641)
chr6 (95-209)||(6935218-6935332)
chr6 (101-152)||(6942973-6943024)
[»] chr4 (17 HSPs)
chr4 (78-203)||(11970965-11971090)
chr4 (86-208)||(53774797-53774919)
chr4 (83-203)||(11981671-11981791)
chr4 (84-165)||(3557726-3557807)
chr4 (84-165)||(3565744-3565825)
chr4 (78-165)||(3560941-3561028)
chr4 (78-170)||(53790548-53790640)
chr4 (80-160)||(1686270-1686350)
chr4 (84-142)||(19359160-19359218)
chr4 (89-208)||(10482138-10482257)
chr4 (96-162)||(6392827-6392893)
chr4 (89-159)||(8443448-8443518)
chr4 (101-174)||(837767-837840)
chr4 (131-208)||(10467999-10468076)
chr4 (101-170)||(35767013-35767082)
chr4 (111-171)||(6372439-6372499)
chr4 (77-157)||(53430081-53430161)
[»] chr3 (3 HSPs)
chr3 (78-160)||(3625739-3625821)
chr3 (89-159)||(25901273-25901343)
chr3 (89-159)||(25915291-25915361)
[»] chr1 (8 HSPs)
chr1 (81-173)||(39379047-39379139)
chr1 (95-159)||(4570933-4570997)
chr1 (78-156)||(4366478-4366556)
chr1 (96-156)||(10218994-10219054)
chr1 (104-159)||(4014974-4015029)
chr1 (95-170)||(50645485-50645560)
chr1 (85-159)||(21855373-21855447)
chr1 (111-159)||(15961234-15961282)
[»] scaffold0867 (1 HSPs)
scaffold0867 (89-196)||(4663-4770)
[»] chr2 (8 HSPs)
chr2 (78-159)||(14514906-14514987)
chr2 (95-201)||(554440-554546)
chr2 (111-159)||(20975564-20975612)
chr2 (111-159)||(25698513-25698561)
chr2 (84-159)||(18908798-18908873)
chr2 (84-159)||(18913546-18913621)
chr2 (84-159)||(18920754-18920829)
chr2 (83-137)||(22051737-22051791)
[»] scaffold0354 (1 HSPs)
scaffold0354 (81-157)||(7471-7547)
[»] chr8 (2 HSPs)
chr8 (83-171)||(27618485-27618573)
chr8 (111-159)||(29390292-29390340)
[»] scaffold0242 (2 HSPs)
scaffold0242 (83-159)||(13718-13794)
scaffold0242 (83-159)||(22553-22629)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18964736 - 18964965
Alignment:
Q  1 ttgccagtatcaatgtataaccattttcggagagacacagtggaaacacttgaggaacaacatcgagtctatagtcgtctaattgaagattctgataaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18964736 ttgccagtatcaatgtataaccattttcggagagacacagtggaaacacttgaggaacaacatcgagtctatagtcgtctatttgaagattctgataaca 18964835  T
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaaaggcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  18964836 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgagtaaaacaaaggcaa 18964935  T
Q  201 tccatcaatacacaaagggtcggagtatca 230  Q
    | ||||||||||||||||||||||||||||    
T  18964936 ttcatcaatacacaaagggtcggagtatca 18964965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 29642437 - 29642352
Alignment:
Q  87 agattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtttt 172  Q
    ||||||||| ||| ||||||||| |||||||||||||| | ||||| |||||||||  ||||||||||||||| ||||||||||||    
T  29642437 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtttt 29642352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 29647754 - 29647633
Alignment:
Q  87 agattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgag 186  Q
    ||||| ||| ||| ||||||||| |||||||||||||| | ||||| |||||||||  |||||||||||||||  ||||||||||| | || ||  ||||    
T  29647754 agattttgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgag 29647655  T
Q  187 tcaaacaaaggcaatccatcaa 208  Q
      ||||||||||||||||||||    
T  29647654 aaaaacaaaggcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 29597544 - 29597628
Alignment:
Q  87 agattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||| ||| ||| ||||||||| |||||||||||||| | |||||||||||||||  |||||||||||||||  ||||||||||    
T  29597544 agattttgaaaactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 24330889 - 24330963
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||| || |||| || |||||| | |||||||||||| |||||||| |||||||||||||| | ||||||||    
T  24330889 gaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataa 24330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 23086833 - 23086788
Alignment:
Q  114 tgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataa 23086788  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 50)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 14076822 - 14076675
Alignment:
Q  8 tatcaatgtataaccattttcggagagacacagtggaaacacttgaggaacaacatcgagtctatagtcgtctaattgaagattctgataacaaatttta 107  Q
    ||||||||||  ||| || ||||||||||||| ||||||||||||||||||||||||             |||| ||||||||||||||||| |||||||    
T  14076822 tatcaatgtaccacctttctcggagagacacaatggaaacacttgaggaacaacatc-------------tctatttgaagattctgataactaatttta 14076736  T
Q  108 agaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgag 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14076735 agaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14076675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 14386850 - 14386703
Alignment:
Q  8 tatcaatgtataaccattttcggagagacacagtggaaacacttgaggaacaacatcgagtctatagtcgtctaattgaagattctgataacaaatttta 107  Q
    ||||||||||  ||| || ||||||||||||| ||||||||||||||||||||||||             |||| ||||||||||||||||| |||||||    
T  14386850 tatcaatgtaccacctttctcggagagacacaatggaaacacttgaggaacaacatc-------------tctatttgaagattctgataactaatttta 14386764  T
Q  108 agaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgag 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14386763 agaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14386703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 19604464 - 19604589
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaaa 195  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| | |||||| ||||  |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaacaaa 19604563  T
Q  196 ggcaatccatcaatacacaaagggtc 221  Q
     | | |||||||| |||  |||||||    
T  19604564 tggagtccatcaacacaataagggtc 19604589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 29874593 - 29874505
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||    
T  29874593 ttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagttt 29874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 19344565 - 19344692
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttg 184  Q
    ||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||  |||||||| || |  | ||  ||    
T  19344565 gaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtg 19344664  T
Q  185 agtcaaacaaaggcaatccatcaataca 212  Q
    ||  ||||||||||| ||||||||||||    
T  19344665 agaaaaacaaaggcagtccatcaataca 19344692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 660830 - 660911
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||| ||||||||| ||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  660830 tctatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataa 660911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 18514775 - 18514858
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 166  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||    
T  18514775 ttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatg 18514858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 22100569 - 22100462
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtc 188  Q
    ||||||||||| |||||| |  || ||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||  ||||| ||||      
T  22100569 attctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaa 22100470  T
Q  189 aaacaaag 196  Q
    ||||||||    
T  22100469 aaacaaag 22100462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 22080955 - 22080830
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaa 177  Q
    |||| ||| ||||||||||||| |||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||| ||  |    
T  22080955 tctatttggagattctgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttga 22080856  T
Q  178 aatcttgagtcaaacaaaggcaatcc 203  Q
    |||| ||||  |||||||| ||||||    
T  22080855 aatcatgagaaaaacaaagacaatcc 22080830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 29859536 - 29859454
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaat 165  Q
    ||||||||| ||||||| ||||||||||||| | |||||||| |||||||||||||||| |||||| | |||||||| |||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 20352177 - 20352089
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||| | ||||| |||||||| || ||||||||| || ||||||||||||||||||||||||| |||||| |  ||||||||||    
T  20352177 ttgaagattatcataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 29867318 - 29867230
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||| || |||| |||| |||| |||||||||||||| |||||||| || |||| |||||||||||||||||| |||| |||||    
T  29867318 ttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagttt 29867230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 6864795 - 6864861
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatt 149  Q
    ||||||||| ||||||| | ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  6864795 ttgaagattatgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcatt 6864861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 22063718 - 22063636
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||||| |||||| |  || ||||||||||| |||| || ||||||||||||||||||||||||||  ||||||||||    
T  22063718 attctgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 1985945 - 1986014
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 154  Q
    ||||||||  ||||| ||||||||  |||||||||||||| |||||||| ||||||||||||||||||||    
T  1985945 gaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgcca 1986014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 22070198 - 22070073
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaa 177  Q
    |||| ||| ||||||| ||||| |||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||  ||  |    
T  22070198 tctatttggagattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttga 22070099  T
Q  178 aatcttgagtcaaacaaaggcaatcc 203  Q
    |||| ||||  |||||||| ||||||    
T  22070098 aatcatgagaaaaacaaagacaatcc 22070073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 29445663 - 29445720
Alignment:
Q  102 attttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataa 29445720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 29454085 - 29454167
Alignment:
Q  77 gtctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||| ||||||||  ||||||| ||||||||  |||||||||||||| |||||||||||||||| | ||||  |||||||||    
T  29454085 gtctatttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataa 29454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 20338976 - 20338915
Alignment:
Q  113 ttgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtttttt 174  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||| |  |||||||||||||    
T  20338976 ttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttttt 20338915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 12819905 - 12819977
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||||||||||| |||  |||||||| ||||||||||| || | |||||||||||||||| |||| |||||||    
T  12819905 tgaagattctgacaactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccata 12819977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 13416910 - 13417018
Alignment:
Q  94 gataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaaca 193  Q
    |||||| ||||||||  |||| |  |||||| |||||||||||||||||||||||||||||||| || ||||  ||||| | |||||| | ||  |||||    
T  13416910 gataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaaca 13417009  T
Q  194 aaggcaatc 202  Q
    ||| |||||    
T  13417010 aagacaatc 13417018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 20058045 - 20058121
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||| | ||||| ||||||||||||||||  |||||| ||||||||||  ||||||| ||||| ||||||||    
T  20058045 ttgaagattttcataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataa 20058121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 20374491 - 20374579
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||| | ||||| |||||||| || |||| |||| || ||| ||||||||||||||||||||| |||||| |  ||||||||||    
T  20374491 ttgaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 24002280 - 24002208
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||||||||||||||| ||| ||||| |||||||||||||| |||| ||||||  | |||||||| |||||||    
T  24002280 tgaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccata 24002208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 29476328 - 29476404
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||| |||||||  |||||||||||||||||||||||||  |||   || ||||||||||| ||||||||||    
T  29476328 ttgaagattttgataacttattttaagaaattgagtccaagagttgtcattccctaattccttcatctgccatataa 29476404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 29881338 - 29881250
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||| | || |||| |||| |||| |||||||||||||| |||||||| ||||||| |||||||||||| | ||| |||| |||||    
T  29881338 ttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagttt 29881250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 9807871 - 9807824
Alignment:
Q  118 tccaagagtcttcaactccaaattccttcatttgccatataatgaaat 165  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaat 9807824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 19597661 - 19597768
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaaaggcaa 200  Q
    |||||| ||||| |||||||| || ||||||||| ||||||||||||| |||||||| || |||| ||||   | |||||| |||   ||||||||| ||    
T  19597661 aattttgagaaactgagtccatgactcttcaacttcaaattccttcatctgccatatgataaaatcagttccatgaaaatcatgacaaaaacaaagggaa 19597760  T
Q  201 tccatcaa 208  Q
    ||||||||    
T  19597761 tccatcaa 19597768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 22021455 - 22021385
Alignment:
Q  102 attttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtttt 172  Q
    |||||||| |||||||||||||| |||||||||||| | ||| |||| ||||||||||  ||||| |||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggtttt 22021385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 20133305 - 20133378
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    ||||||||| ||||| | ||| ||||  || ||| ||||||| ||||||||||||||||| |||||||||||||    
T  20133305 ttgaagattgtgatagctaatgttaaataactgaatccaagaatcttcaactccaaattctttcatttgccata 20133378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 20140806 - 20140879
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    ||||||||| ||||| | ||| |||| ||  ||| ||||||| | |||||||||||||||||||||||||||||    
T  20140806 ttgaagattgtgatagctaatgttaaaaagctgaatccaagaattttcaactccaaattccttcatttgccata 20140879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 19351058 - 19351130
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    ||||||| |||| ||| |||||| || ||| |||||||||| || ||||||||||||||| |||| |||||||    
T  19351058 tgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccata 19351130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 19637248 - 19637292
Alignment:
Q  126 tcttcaactccaaattccttcatttgccatataatgaaatgagtt 170  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||    
T  19637248 tcttgaactccaaattccttcatttgccatataataaaatcagtt 19637292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 19645621 - 19645697
Alignment:
Q  86 aagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatga 162  Q
    |||| ||| ||||| ||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||||| ||||    
T  19645621 aagactctcataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgccatattatga 19645697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 24010464 - 24010392
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||||||||||||||| ||| ||||| |||||||||||||| |||| ||| ||  | |||||||| |||||||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccata 24010392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 29106883 - 29106823
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||| |||||||| || |||||||||||| |||||||| ||||||| |||||| |||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccata 29106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 15444044 - 15443973
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||||||||| ||||  || ||||  |||||||||||||| |||||||||||| | |||||||| |||||||    
T  15444044 gaagattctggtaactcatcttaaataattgagtccaagactcttcaactccatactccttcatatgccata 15443973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 19357992 - 19357909
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 166  Q
    |||||||| |||| ||| |||||| |  |||||||||||||| |||| ||||||||||||| |||| | ||||| || ||||||    
T  19357992 ttgaagatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatg 19357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 24385283 - 24385208
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatata 158  Q
    ||||||||| |||| || ||||||||||||| || ||||||| | |||||||||||| | |||||| | |||||||    
T  24385283 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 24385208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 36260333 - 36260246
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtttt 172  Q
    ||||||| ||||| | |||||||| || |||| ||||||| ||||||||||||||||| | ||| | ||||||||  |||| ||||||    
T  36260333 gaagattttgatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagtttt 36260246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 18952906 - 18952976
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 166  Q
    |||| ||||||||| || |||||||| || |  |||||||||||||||||||| |||||||| || |||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatg 18952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 18982953 - 18983023
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 166  Q
    |||| ||||||||| || |||||||| || |  |||||||||||||||||||| |||||||| || |||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatg 18983023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 18997599 - 18997669
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 166  Q
    |||| ||||||||| || |||||||| || |  |||||||||||||||||||| |||||||| || |||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatg 18997669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 19374820 - 19374778
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattcc 143  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  19374820 aattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 22028688 - 22028634
Alignment:
Q  105 ttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||| |||||||||||||| |||||||||||| | ||| |||||| ||||||||    
T  22028688 ttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataa 22028634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 29899438 - 29899380
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||| | |||||||||||| || |||||||| ||||||| |||||| ||||||||||    
T  29899438 aatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataa 29899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 46769451 - 46769373
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaa 163  Q
    ||||||| || |||| ||||||||||| |||||||||||  ||||||||||| |||   ||||| ||||| ||||||||    
T  46769451 gaagattttggtaactaattttaagaagttgagtccaaggctcttcaactccgaatattttcatctgccacataatgaa 46769373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 19325968 - 19326060
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtt 170  Q
    |||| ||||| ||||||| |||  ||||| |  |||||||||||||| | ||| ||||||||||||  ||| ||||||||||  |||||||||    
T  19325968 tctacttgaacattctgaaaactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagtt 19326060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 21218724 - 21218772
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||||||||||| |  ||| ||||||||||| |||||||||||||||    
T  21218724 aattgagtccaagacttatcatctccaaattccgtcatttgccatataa 21218772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 36255448 - 36255372
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||| ||||| | || |||||  | |||||||||||| ||||||||||||||||  | ||||| ||||||||    
T  36255448 ttgaagattttgatagctaactttaatgagttgagtccaagactcttcaactccaaatttttccattttccatataa 36255372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 17369818 - 17369675
Alignment:
Q  8 tatcaatgtataaccattttcggagagacacagtggaaacacttgaggaacaacatcgagtctatagtcgtctaattgaagattctgataacaaatttta 107  Q
    ||||||||||  |||||||||||| ||||||| |||||||||||||  |||| |||| ||||||||  |   || ||||||||||||||||| |||||||    
T  17369818 tatcaatgtaccaccattttcggatagacacaatggaaacacttgaaaaacatcatcaagtctataagc---tatttgaagattctgataactaatttta 17369722  T
Q  108 agaaattgagtccaagagtcttcaactccaaattccttcatttgcca 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17369721 agaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 20770737 - 20770598
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaa 177  Q
    |||| ||||||||| ||||||| ||||||||| |||||| |||| || ||||||| ||||||||||||||||||||||||||  |||| |||||||| ||    
T  20770737 tctatttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaa 20770638  T
Q  178 aatcttgagtcaaacaaaggcaatccatcaatacacaaag 217  Q
     ||| ||||  |||||||  ||||||||||| ||||||||    
T  20770637 catcatgagaaaaacaaatacaatccatcaacacacaaag 20770598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 6921340 - 6921472
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttg 184  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | | |||| |     
T  6921340 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 6921439  T
Q  185 agtcaaacaaaggcaatccatcaatacacaaag 217  Q
    ||  ||| | |||||||||||||||||| ||||    
T  6921440 agaaaaatagaggcaatccatcaatacagaaag 6921472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 6947870 - 6948002
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttg 184  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||  || || ||||| |  ||||| ||    
T  6947870 gaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatg 6947969  T
Q  185 agtcaaacaaaggcaatccatcaatacacaaag 217  Q
     |  |||||||||||||||||||| ||| ||||    
T  6947970 tgaaaaacaaaggcaatccatcaacacagaaag 6948002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 6954525 - 6954641
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaaaggcaa 200  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| |  ||||| | ||  ||||| ||||||    
T  6954525 aattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaa 6954624  T
Q  201 tccatcaatacacaaag 217  Q
    |||||||||||| ||||    
T  6954625 tccatcaatacagaaag 6954641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 6935218 - 6935332
Alignment:
Q  95 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaa 194  Q
    ||||| ||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||||   |||| ||||| | |||||| | ||  ||| |     
T  6935218 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatag 6935317  T
Q  195 aggcaatccatcaat 209  Q
    |||||||||||||||    
T  6935318 aggcaatccatcaat 6935332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 6942973 - 6943024
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgc 152  Q
    ||||||||| ||||| ||| |||| |||||||||||||||||||||||||||    
T  6942973 aattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgc 6943024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 11970965 - 11971090
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaa 177  Q
    |||| ||||||||| ||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||| |||||    
T  11970965 tctatttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagtttgttcaa 11971064  T
Q  178 aatcttgagtcaaacaaaggcaatcc 203  Q
    |||| ||||  |||||||| ||||||    
T  11971065 aatcatgagaaaaacaaagacaatcc 11971090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  86 aagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttga 185  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| || |||||| | |    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  186 gtcaaacaaaggcaatccatcaa 208  Q
    |  |||||||  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 11981671 - 11981791
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatct 182  Q
    |||||||||  |||||| ||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||  |||||||||| || ||||||     
T  11981671 ttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagtttgttgaaaatca 11981770  T
Q  183 tgagtcaaacaaaggcaatcc 203  Q
    ||||  |||||||| ||||||    
T  11981771 tgagaaaaacaaagacaatcc 11981791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 3557807 - 3557726
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaat 165  Q
    |||||||  ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaat 3557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 3565825 - 3565744
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaat 165  Q
    |||||||  ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 3565744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 3560941 - 3561028
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaat 165  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||| |||||||| |||||||  ||||| ||||| ||||| ||||    
T  3560941 tctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaat 3561028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 53790640 - 53790548
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtt 170  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||   |||| | ||||||||| |||||||||    
T  53790640 tctacttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatgagtt 53790548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 1686270 - 1686350
Alignment:
Q  80 taattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataat 160  Q
    |||||||||||  | ||||| |  ||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||    
T  1686270 taattgaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataat 1686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 19359218 - 19359160
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattc 142  Q
    |||||||| ||||| | |||||||| || |||||||||||| |||||||||||||||||    
T  19359218 tgaagattttgatacctaattttaataagttgagtccaagactcttcaactccaaattc 19359160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 10482257 - 10482138
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtc 188  Q
    ||||||||||  ||||||||  |||||| |||||||    | ||||||||| |||||||||||||||||||  |||| |||||  ||| |||| |||       
T  10482257 attctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgacca 10482158  T
Q  189 aaacaaaggcaatccatcaa 208  Q
    |||||||| |||||||||||    
T  10482157 aaacaaagacaatccatcaa 10482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 6392893 - 6392827
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatga 162  Q
    |||| ||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||||| ||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatga 6392827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 8443448 - 8443518
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||||| ||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| ||||    
T  8443448 attctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataa 8443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 837840 - 837767
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtttttt 174  Q
    ||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||||||||  ||||| |||||||    
T  837840 aattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttttt 837767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 10468076 - 10467999
Alignment:
Q  131 aactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaaaggcaatccatcaa 208  Q
    ||||||||| |||||||||||||||||||  |||| |||||  ||| |||| |||   |||||||| |||||||||||    
T  10468076 aactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgaccgaaacaaagacaatccatcaa 10467999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 35767082 - 35767013
Alignment:
Q  101 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtt 170  Q
    ||||||||| | |||| ||||||| ||||||||||||||||| | ||| | ||||||||  |||||||||    
T  35767082 aattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatgagtt 35767013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 6372499 - 6372439
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    |||||| || |||| |||| ||||||| | |||||||||||||||||||| ||||| ||||    
T  6372499 aattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 53430081 - 53430161
Alignment:
Q  77 gtctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatat 157  Q
    ||||| ||||||||  || |||| ||||||||| |||||||||||||| |||||  | ||| ||| |||||| ||||||||    
T  53430081 gtctacttgaagatgttggtaactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 3625821 - 3625739
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataat 160  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  3625821 tctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataat 3625739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 25901273 - 25901343
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||||| |||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||||||||    
T  25901273 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 25901343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 25915291 - 25915361
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||||| |||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||||||||    
T  25915291 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 25915361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 39379047 - 39379139
Alignment:
Q  81 aattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttt 173  Q
    ||||||||||  |||||||  ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||| |||||||    
T  39379047 aattgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagttttt 39379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 4570997 - 4570933
Alignment:
Q  95 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  4570997 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 4570933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 4366478 - 4366556
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||| |||||||||||| |||| || |||||||||| |||||||||| |||||||| || |||| |||||| |||||||    
T  4366478 tctatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccata 4366556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 10219054 - 10218994
Alignment:
Q  96 taacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 156  Q
    |||| ||||||||| |||||||||||||| |||||||  ||||||| ||||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccata 10218994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 4014974 - 4015029
Alignment:
Q  104 tttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||    
T  4014974 tttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataa 4015029  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 50645485 - 50645560
Alignment:
Q  95 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagtt 170  Q
    ||||| ||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| ||||  |||||||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagtt 50645560  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 21855373 - 21855447
Alignment:
Q  85 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||| || |||| || |||||| | |||||||||||| |||||||| |||||||||||||| | ||||||||    
T  21855373 gaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataa 21855447  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 15961282 - 15961234
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||||||||||| |||||| ||||||||| |||||||| ||||||||    
T  15961282 aattgagtccaagattcttcagctccaaatttcttcattttccatataa 15961234  T

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Target: scaffold0867 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 4663 - 4770
Alignment:
Q  89 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtc 188  Q
    ||||||||||| |||||| |  || ||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||  ||||| ||||      
T  4663 attctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaa 4762  T
Q  189 aaacaaag 196  Q
    ||||||||    
T  4763 aaacaaag 4770  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 14514987 - 14514906
Alignment:
Q  78 tctaattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||| ||||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||| | ||||| ||||||||    
T  14514987 tctatttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataa 14514906  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 554546 - 554440
Alignment:
Q  95 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaaaatcttgagtcaaacaa 194  Q
    ||||| ||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||||||||| | ||| |||   |||||||| ||||  ||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggttccctcaaaatcgtgagaaaaacaa 554447  T
Q  195 aggcaat 201  Q
    || ||||    
T  554446 agacaat 554440  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 20975612 - 20975564
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataa 20975564  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 25698561 - 25698513
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataa 25698513  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 18908798 - 18908873
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||||| ||| ||| |||||| || |||||||||||||| |||| ||||||||||||| |||| | ||||||||    
T  18908798 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataa 18908873  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 18913546 - 18913621
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||||| ||| ||| |||||| || |||||||||||||| |||| ||||||||||||| |||| | ||||||||    
T  18913546 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataa 18913621  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 18920754 - 18920829
Alignment:
Q  84 tgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||||||| ||| ||| |||||| || |||||||||||||| |||| ||||||||||||| |||| | ||||||||    
T  18920754 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataa 18920829  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 22051737 - 22051791
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactcca 137  Q
    ||||||||||||||||| |||||| | ||||||||||||| | |||| |||||||    
T  22051737 ttgaagattctgataactaattttgaaaaattgagtccaatattcttgaactcca 22051791  T

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Target: scaffold0354 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 7547 - 7471
Alignment:
Q  81 aattgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatat 157  Q
    |||||||||||| |||| | ||||||||| ||||||  |||||| || |||||||||||||||||||||||||||||    
T  7547 aattgaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccatat 7471  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 27618573 - 27618485
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttt 171  Q
    ||||||||||||||||| || |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||||||||  ||||||||||    
T  27618573 ttgaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagttt 27618485  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 29390340 - 29390292
Alignment:
Q  111 aattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    |||| ||| ||||| |||||||||||||||||| |||| ||||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataa 29390292  T

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Target: scaffold0242 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 13718 - 13794
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||| ||||| |  ||||||||||| ||||||||||| || |||  ||| ||||||||||| ||||||||||    
T  13718 ttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataa 13794  T

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Target: scaffold0242; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 22553 - 22629
Alignment:
Q  83 ttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 159  Q
    ||||||||| ||||| |  ||||||||||| ||||||||||| || |||  ||| ||||||||||| ||||||||||    
T  22553 ttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataa 22629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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