View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21455_high_15 (Length: 282)
Name: NF21455_high_15
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41327185 - 41327306
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41327185 |
gggttctgaaggagattcgatggagaggtagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatgaaggcaaagttaa |
41327284 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41327285 |
taaaaatgtgaaatgggattgt |
41327306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42313539 - 42313658
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42313539 |
gggttctgaaggagatttgatggag--gcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatgaaggctaagttaa |
42313636 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42313637 |
taaaaatgtgaaatgggattgt |
42313658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 42313739 - 42313805
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaag |
263 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42313739 |
gtttgatggaaaagtgtagttcacgacatgttaccaatacccatgctttcttgttccaatgttgaag |
42313805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20910293 - 20910413
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
20910293 |
gggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatgaaggaaaagataa |
20910391 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20910392 |
taaaaatgtgaaatgggattgt |
20910413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20924741 - 20924861
Alignment:
| Q |
1 |
gggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatgaaggctaagttaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
20924741 |
gggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatgaaggaaaagataa |
20924839 |
T |
|
| Q |
101 |
taaaaatgtgaaatgggattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20924840 |
taaaaatgtgaaatgggattgt |
20924861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 20910488 - 20910554
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaag |
263 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20910488 |
gtttgatggaaaagtgtagttcataacatgttaccaatacccatgctttcttgttccaatgttgaag |
20910554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 20924936 - 20925002
Alignment:
| Q |
197 |
gtttgatggaaaagtgtagttcacaacatgttaccaatacccatgctttctttttccaatgttgaag |
263 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20924936 |
gtttgatggaaaagtgtagttcataacatgttaccaatacccatgctttcttgttccaatgttgaag |
20925002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University