View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21455_high_16 (Length: 257)
Name: NF21455_high_16
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34287728 - 34287988
Alignment:
| Q |
1 |
caatatttttcatactgaaccatataatgtgaatattgaatattacatgcgatgaataatgctaagaagacaccctctacca-caccca----------- |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
34287728 |
caatatttttcatactgaaccatataatgtgaatattgaatattacatgcgatgaataatgctaagaagacaccctctaccaacacgcaaatttggtaga |
34287827 |
T |
|
| Q |
89 |
-------ttccaacacgctttctttattgcttgaaattcatataagtcccaccaagttacgtgggtctcataaatttagtggaactcataaattttaacc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34287828 |
gggtgtcttccaacacgctttctttattgcttgaaattcatataagttccaccaagttacgtgggtctcataaatttagtggaactcataaattttaacc |
34287927 |
T |
|
| Q |
182 |
aataaaaaataatgtgtctgaatgtatgttaaaatgagtgatgctagatttcctcgtgcat |
242 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34287928 |
aataaaagataatgtgtctgaatgtatgttaaaatgagtgatgctagatttcctcgtgcat |
34287988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 34297017 - 34297174
Alignment:
| Q |
51 |
gatgaataatgctaagaagacaccctctaccacacccattccaacacgctttctttattgcttgaaattcatataagtcccaccaagttacgtgggtctc |
150 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||| |||||| || |||||||||||||||||||||||||| ||||||| |||| |||| | |
|
|
| T |
34297017 |
gatgaataatgctaagaagacacgctctactacacacatttcaacacact--ctttattgcttgaaattcatataagttccaccaaattacacgggttcc |
34297114 |
T |
|
| Q |
151 |
a-taaatttagtggaactcata--aattttaaccaataaaaaataatgtgtctgaatgta |
207 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||| |||| | ||||||| |||||||| |
|
|
| T |
34297115 |
attaaatttactggaactcatatgaattttaaccaaaaaaagagaatgtgtttgaatgta |
34297174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 34281463 - 34281547
Alignment:
| Q |
102 |
tctttattgcttgaaattcatataagtcccaccaagttacgtgggtctcat--aaatttagtggaactcata--aattttaaccaa |
183 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||| ||| |||||||||| |||| ||| |||||||||||| |
|
|
| T |
34281463 |
tctttattgcttgaaattcatatatgtcccaccaagtt-cgtcggtcccataaaaatttagtgaaacttatatgaattttaaccaa |
34281547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University