View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_high_17 (Length: 257)
Name: NF21455_high_17
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 7500551 - 7500329
Alignment:
| Q |
19 |
cagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
118 |
Q |
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| T |
7500551 |
cagagattacatagcataacaaaaagattgaaggttgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
7500452 |
T |
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| Q |
119 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500451 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttatt |
7500352 |
T |
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| Q |
219 |
attttaatacacaacatataagt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
7500351 |
attttaatacacaacatataagt |
7500329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 15171769 - 15171549
Alignment:
| Q |
19 |
cagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
118 |
Q |
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||||||||||||||||| | |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
15171769 |
cagagattacatagcataacaaaa-gattgaggattgaaggtttttattgaaatacac--gagtgcctaacagtagttcttattctaatcaatacagcct |
15171673 |
T |
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| Q |
119 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcct-aaaacatagatagaaacatatgcataaaaaacaacttat |
217 |
Q |
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||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | ||| | |||||||||||||||||||||| |||| ||||| |
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| T |
15171672 |
catcagtgctaagcaaacttcctgaaacataaaccttcaacttctgtgccaaacaagcatgaaaccttagatagaaacatatgcataaataacagcttat |
15171573 |
T |
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| Q |
218 |
tattttaatacacaacatataagt |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
15171572 |
tattttaatacacaacatataagt |
15171549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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