View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_high_20 (Length: 254)
Name: NF21455_high_20
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 34287256 - 34287492
Alignment:
| Q |
17 |
acaaagtacatagtttaaacattgaaaaatcagtacactagtgggtggacattcagaacaacattcccaaaa-attagattaagtaacattcccaaaact |
115 |
Q |
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| T |
34287256 |
acaaagtacatagtttaaacattgaaaaaccagtacactagtgggtggacattcagaacaacattcccaaaaaattagattaagtaacattcccaaaact |
34287355 |
T |
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| Q |
116 |
ttatacagatgaaggaaaaacttttatacagatgaagttaataatagtctacagaaaattgagtcacatagtgttatttgatagatcaatagcttcttcc |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34287356 |
ttatacagatgaaggaaaaacttttatacaaatgaagttaataatagtctacagaaaattgagtcacatagtgttatttgatagatcaatagcttcttcc |
34287455 |
T |
|
| Q |
216 |
tcagttctacannnnnnnacacaaggtccaaatactt |
252 |
Q |
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| T |
34287456 |
tcagtgctacatttttttacacaaggtccaaatactt |
34287492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 18770091 - 18770185
Alignment:
| Q |
19 |
aaagtacatagtttaaacattgaaaaatcagtacactagtgggtggacattcagaacaacattcccaaaaattagattaagtaacattcccaaaa |
113 |
Q |
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| T |
18770091 |
aaagtacatagtttcaacattgaaaaaccaataaactagtggttggacattcaaaacaatattcccaaaaattagattaagtaatattctcaaaa |
18770185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 18771929 - 18772010
Alignment:
| Q |
19 |
aaagtacatagtttaaacattgaaaaatcagtacactagtgggtggacattcagaacaacattcccaaaaattagattaagt |
100 |
Q |
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| T |
18771929 |
aaagtacataatttcaacattgaaaaaccaatacacttataggtggacattcaaaacaatattcccaaaaattagattaagt |
18772010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 44180137 - 44180060
Alignment:
| Q |
140 |
tatacagatgaagttaataatagtctacagaaaattgagtcacatagtgttatttgatagatcaatagcttcttcctc |
217 |
Q |
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||||||||||||||||| |||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
44180137 |
tatacagatgaagttaacgttagttcgcagaaaactgactcacatagtgtcatttgctagatcaatagcttcttcctc |
44180060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 9882168 - 9882207
Alignment:
| Q |
19 |
aaagtacatagtttaaacattgaaaaatcagtacactagt |
58 |
Q |
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||||||||||||||||||||||||||| || ||||||||| |
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| T |
9882168 |
aaagtacatagtttaaacattgaaaaaccaatacactagt |
9882207 |
T |
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