View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21455_high_29 (Length: 226)

Name: NF21455_high_29
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21455_high_29
NF21455_high_29
[»] chr2 (2 HSPs)
chr2 (1-220)||(43369159-43369378)
chr2 (18-216)||(43365028-43365226)
[»] chr8 (5 HSPs)
chr8 (89-220)||(11366681-11366812)
chr8 (116-220)||(1349866-1349970)
chr8 (116-211)||(1360533-1360628)
chr8 (116-201)||(1343439-1343524)
chr8 (116-201)||(1356063-1356148)
[»] chr3 (1 HSPs)
chr3 (61-201)||(24617858-24617998)
[»] chr7 (2 HSPs)
chr7 (89-212)||(29389250-29389373)
chr7 (87-220)||(13589914-13590047)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43369159 - 43369378
Alignment:
Q  1 tgtaatcgaaggctatttgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43369159 tgtaatcgaaggctatttgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagc 43369258  T
Q  101 ggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43369259 ggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcc 43369358  T
Q  201 tgtgcctttttgcaatattt 220  Q
    ||||||||||||||||||||    
T  43369359 tgtgcctttttgcaatattt 43369378  T

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Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 43365028 - 43365226
Alignment:
Q  18 tgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacga 117  Q
    ||||||||| |||||| |||| ||||| |||||||||||||| |||||| |||||||||| | |||| ||||||||| |||||||||||||||| || ||    
T  43365028 tgcagcacacgccaactcacagagcatatttgtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatga 43365127  T
Q  118 aatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaat 216  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||    
T  43365128 aatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactgcacaattcttggaagatcccatgcctttttgcaat 43365226  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 11366812 - 11366681
Alignment:
Q  89 ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt 188  Q
    |||||| |||||||||| || || || |||||||||| |||| |||||||||||||  ||||| || ||| || |||||||||||||||  |||||||||    
T  11366812 ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt 11366713  T
Q  189 cttggaagatcctgtgcctttttgcaatattt 220  Q
    |||||||| |||  |||||||||| |||||||    
T  11366712 cttggaagttccattgcctttttgtaatattt 11366681  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 1349970 - 1349866
Alignment:
Q  116 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa 215  Q
    ||||| ||||||||| ||||||| ||||| ||| ||||| ||| || ||||||||||||||| ||| | || ||||| ||||||| || |||||||| ||    
T  1349970 gaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactcttgcaagatccagttcctttttgtaa 1349871  T
Q  216 tattt 220  Q
    |||||    
T  1349870 tattt 1349866  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 1360628 - 1360533
Alignment:
Q  116 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgccttttt 211  Q
    ||||| ||||||||| |||||||||| || |||||| |  ||| || | || |||||||||| ||||| || |||||||||||||||| |||||||    
T  1360628 gaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactcttggaagatcctgtcccttttt 1360533  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 1343524 - 1343439
Alignment:
Q  116 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct 201  Q
    ||||||||||||||| |||||||||| |  | |||| || | | || ||||||||||||||| ||| | || ||||||||||||||    
T  1343524 gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1343439  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 1356063 - 1356148
Alignment:
Q  116 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct 201  Q
    ||||||||||||||| |||||||||| |  | |||| || | | || ||||||||||||||| ||| | || ||||||||||||||    
T  1356063 gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1356148  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 24617998 - 24617858
Alignment:
Q  61 acgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaa 160  Q
    ||||| || |||||||||| |||||||||||||| |||| ||||| || |  ||  |||||||||||||| |||||||||| |  |||||| || | | |    
T  24617998 acgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtga 24617899  T
Q  161 cctgttgaggaagacatgttgcacaattcttggaagatcct 201  Q
    | ||||||||||||||| ||| | || ||||||||||||||    
T  24617898 cttgttgaggaagacatattggagaagtcttggaagatcct 24617858  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 29389250 - 29389373
Alignment:
Q  89 ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt 188  Q
    |||||| ||||||||||||| || || |||| |||||||||| ||||| ||||||| |||| | || |   || | || |||||||||| | ||||||||    
T  29389250 ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt 29389349  T
Q  189 cttggaagatcctgtgcctttttg 212  Q
     ||||||||||| |||||||||||    
T  29389350 tttggaagatcccgtgcctttttg 29389373  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 13590047 - 13589914
Alignment:
Q  87 ttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaa 186  Q
    |||||||||||||| |||| || |  || ||||| ||||||| | ||||||| || || |||||| |||||| |||| || |||||||||| ||||| |     
T  13590047 ttccttgtctgagcagcctcgtacccgatgaaattgacaatattcaagaattgagttcaacattgcagaacttacctctttaggaagacatattgcagag 13589948  T
Q  187 ttcttggaagatcctgtgcctttttgcaatattt 220  Q
     ||| |||| ||||  | ||||||||||||||||    
T  13589947 ctctcggaaaatcccatccctttttgcaatattt 13589914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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