View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_high_30 (Length: 211)
Name: NF21455_high_30
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 30561545 - 30561743
Alignment:
| Q |
13 |
aatatgattatgtaagatatatgccattcctaatacatgttttcaattgtgaaattgttaaacagaatccacttccatatcttgctcgtcatccaggagc |
112 |
Q |
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| T |
30561545 |
aatatgattatgtaagatatataccattcctaatacatgttttcaattgtgaaattgttaaacagaatccacttccatatcttgctcgtcatccaggagc |
30561644 |
T |
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| Q |
113 |
agatattttaacttcaagtgatcaagtagttccaacagttgttgatgacagtttagaaatttggcaagaaggtgaatattatactataatgtgaactta |
211 |
Q |
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| T |
30561645 |
agatattttaacttcaagtgatcaagtagttccaacagttgttgatgacagtttagaaatttggcaagaaggtgaatattatactataatgtgaactta |
30561743 |
T |
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Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 10390813 - 10390693
Alignment:
| Q |
75 |
cagaatccacttccatatcttgctcgtcatccaggagcagatattttaacttcaagtgatcaagtagttccaacagttgttgatgacagtttagaaattt |
174 |
Q |
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||||| ||||||||||||||||||||| |||| ||||||||| ||||||| || ||||||||||| | |||||||||||||| || ||| | ||| ||| |
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| T |
10390813 |
cagaacccacttccatatcttgctcgttatcctggagcagatgttttaacatccagtgatcaagttataccaacagttgttgacgatagtctggaagttt |
10390714 |
T |
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| Q |
175 |
ggcaagaaggtgaatattata |
195 |
Q |
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| T |
10390713 |
ggaaagaaggtcaatattata |
10390693 |
T |
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