View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_high_4 (Length: 560)
Name: NF21455_high_4
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 12 - 539
Target Start/End: Original strand, 3312358 - 3312881
Alignment:
| Q |
12 |
caaaaggaacaactagatagaaatttatgttatcactcttgataggattgccataattccctcattccattcagttttttgtgttggccacaaattcacg |
111 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3312358 |
caaaaggaacagctagatagaaatttatgttatcactcttgatggaattgccataattccctcattccattcagttttttgtgttggccacaaattcacg |
3312457 |
T |
|
| Q |
112 |
ttgtgacaaatttacgaagataaactatatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatgact |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3312458 |
ttgtgacaaatttacgaagataaactatatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatggct |
3312557 |
T |
|
| Q |
212 |
tattgattttacatcaaaagatgagattgataaggatactctcttagatcttataataaagaggaccgtgaacttctacttttaaagatccatgttagtt |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
3312558 |
tattgattttacatcaaaagatgagattgatagggacactctcttagatcttataataaagagaaccgcgaacttctacttttaaagatccatgttagtt |
3312657 |
T |
|
| Q |
312 |
atcattagaattttaaatgattttcaagtattgatccattgtactcaatcattgttgcctagaaactataagacaaatcataagtcaaagtgtgctatag |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3312658 |
atcgttagaattttaaatgattttcaagtattgatccattgtactcaatcattgttgcctagaaactataagacaaatcataagtcaaagtgtgctatag |
3312757 |
T |
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| Q |
412 |
ttttttaattatgtggttaatcaattataatatttgttaagtgcaggggcggaatcaggatttgaacatcagaggaccaaatttaaaaggtatactttag |
511 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3312758 |
tttt----ttatgtggttaatcaattataatatttgttaagtgcaggggcggaaccaggatttgaacatcagaggaccaaatttaaaaggtatactttag |
3312853 |
T |
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| Q |
512 |
taaaataaaaataaattctcaaatgcac |
539 |
Q |
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| T |
3312854 |
taaaataaaaataaattctcaaatgcac |
3312881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 182 - 451
Target Start/End: Original strand, 3319639 - 3319905
Alignment:
| Q |
182 |
gtgaactttgtgcatgtgcgattgatgacttattgattttacatcaaaagatgagattgataaggatactctcttagatcttataataaagaggaccgtg |
281 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| || | | ||| |
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| T |
3319639 |
gtgaactttgtgcaagtgcgattgatgatttattgattttacaccaaaagatgagaccgatagggatactctcttagatcttataattaaaaaaatcgta |
3319738 |
T |
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| Q |
282 |
aacttctacttttaaagatccatgttagttatcattagaattttaaatgattttcaagtattgatccattgtactcaatcattgttgcctagaaactata |
381 |
Q |
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||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||| || || |||||||||| ||||||||||||||| |
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| T |
3319739 |
aacttctacttctaaagatccatgttagttatcgttataattttaaatggttttcaagtatagatctatcatattcaatcattgatgcctagaaactata |
3319838 |
T |
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| Q |
382 |
agacaaatcataagtcaaagtgtgctatagttttttaattatgtggttaatcaattataatatttgttaa |
451 |
Q |
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| ||||||||||| | |||||| |||||||||||| | |||||||||| |||||||||||| |||||| |
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| T |
3319839 |
atacaaatcataaatgaaagtgagctatagttttt---tcatgtggttaaccaattataatatatgttaa |
3319905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 3319490 - 3319559
Alignment:
| Q |
53 |
ataggattgccataattccctcattccattcagtt--ttttgtgttggccacaaattcacgttgtgacaa |
120 |
Q |
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|||||||||||| |||| |||||||||||| | || |||||| ||||||||||||||| |||||||||| |
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| T |
3319490 |
ataggattgccagaatttcctcattccatttatttatttttgtattggccacaaattcaagttgtgacaa |
3319559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 539
Target Start/End: Original strand, 507864 - 507936
Alignment:
| Q |
468 |
aggatttgaacatcagaggaccaaatttaaaaggtatactttagtaaa-ataaaaataaattctcaaatgcac |
539 |
Q |
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||||||| ||||| | ||||||| |||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
507864 |
aggatttaaacattgggggaccaagtttaaaaggtatactttactaaagacaaaaataaattctcaaatgcac |
507936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Complemental strand, 24537763 - 24537718
Alignment:
| Q |
495 |
taaaaggtatactttagtaaa-ataaaaataaattctcaaatgcac |
539 |
Q |
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| T |
24537763 |
taaaaggtatactttagtaaagacaaaaataaattctcaaatgcac |
24537718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 35307585 - 35307528
Alignment:
| Q |
483 |
gaggaccaaatttaaaaggtatactttagtaaa-ataaaaataaattctcaaatgcac |
539 |
Q |
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||||||||| ||||||| ||||||||| |||| ||||||||||||||| |||||||| |
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| T |
35307585 |
gaggaccaagtttaaaatatatactttaataaagataaaaataaattcttaaatgcac |
35307528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 4523400 - 4523344
Alignment:
| Q |
483 |
gaggaccaaatttaaaaggtatactttagtaaaataaaaataaattctcaaatgcac |
539 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||||| |
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| T |
4523400 |
gaggaccaagtttaaaaggtatagtttcctaaagaaaaaataaattttcaaatgcac |
4523344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 27416881 - 27416802
Alignment:
| Q |
454 |
gcaggggcggaatcaggatttgaacatcagagga-ccaaatttaaaaggtatactttagtaaa-ataaaaataaattctc |
531 |
Q |
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||||||||||| |||||||| |||||| | ||| |||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
27416881 |
gcaggggcggagccaggatttaaacatcgggggaaccaagtttaaaaggtatactttagtaaaggcaaaaataaattctc |
27416802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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