View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_high_7 (Length: 436)
Name: NF21455_high_7
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 37 - 419
Target Start/End: Original strand, 30654023 - 30654397
Alignment:
| Q |
37 |
gaaggcagaccaagatatttttctgttcccataacagcacgggcacctaaagtattggttatggagtctctttgcgatgcttccacatgattgctatagt |
136 |
Q |
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| T |
30654023 |
gaagggagaccaagatattttcctgttcccataacagtacggacacctaaagtattggttatggagtctctttgcgatgcttccacacgattgcta---- |
30654118 |
T |
|
| Q |
137 |
acacttcaaaacttgggtaagctaatagcctgcgcaaaagtagcttcatatgtggctaatatatttttcatcacttgagcttctcgatcttctgccatga |
236 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
30654119 |
---cttcaaa-cttgggtaagctaatagcctacgcaaaagtagcttcatatgtggctaatatatttttcatcacttgagcttctcgatcttccgccctga |
30654214 |
T |
|
| Q |
237 |
gaaaaaggaaacaatcatttgcaaataataggtgagatataacaggcgcatcagtacatattcgtatgtcatgcaagtctcctcttctttcagcttgttt |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
30654215 |
gaaaaaggaaacaatcatttgcaaataataggtgagatataacaggcgcatcagtgcatattcgtatgtcatgcaagtctccccttctttcagcttgtct |
30654314 |
T |
|
| Q |
337 |
gatgagcgcatataagccttctgcacataaaatgaagagataatggaacaagggattgccttgccgcaaccccagccaagtat |
419 |
Q |
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| T |
30654315 |
gatgagcgcatataagccttctgcacataaaatgaagagataatggaacaagggattgccttgccgccaccccagccaagtat |
30654397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 14859056 - 14859231
Alignment:
| Q |
37 |
gaaggcagaccaagatatttttctgttcccataacagcacgggcacctaaagtattggttatggagtctctttgcgatgcttccacatgattgctatagt |
136 |
Q |
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||||| ||||||||||||||| ||| |||| ||||||| | |||||| ||||||||| ||||| |||||| | | || ||||||| | ||| |||||| |
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| T |
14859056 |
gaaggaagaccaagatattttcttgtccccaaaacagcatga-cacctagagtattggtgatggattctcttagtgttgtttccacacggttgttatagt |
14859154 |
T |
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| Q |
137 |
acacttcaaaacttgggtaagctaatagcctgcgcaaaagtagcttcatatgtggctaatatatttttcatcacttga |
214 |
Q |
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|||||| ||||||||||||||||||||| | |||||||| ||||||| || |||| ||||| |||||||||||| |
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| T |
14859155 |
acactt-tggacttgggtaagctaatagcctacccaaaagtaacttcataggttcctaaaatattattcatcacttga |
14859231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 12716746 - 12716813
Alignment:
| Q |
244 |
gaaacaatcatttgcaaataataggtgagatataacaggcgcatcagtacatattcgtatgtcatgca |
311 |
Q |
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| T |
12716746 |
gaaacaatcatctgcaaataaaaggtgagaaataacgggagcattagtacatatagatatgtcatgca |
12716813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 12777977 - 12778044
Alignment:
| Q |
244 |
gaaacaatcatttgcaaataataggtgagatataacaggcgcatcagtacatattcgtatgtcatgca |
311 |
Q |
| |
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||||||||||| ||||||||| |||||||| ||||| || |||| ||||||||| ||||||||||| |
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| T |
12777977 |
gaaacaatcatctgcaaataaaaggtgagaaataacgggagcattagtacatatagatatgtcatgca |
12778044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 48028040 - 48028076
Alignment:
| Q |
242 |
aggaaacaatcatttgcaaataataggtgagatataa |
278 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
48028040 |
aggaaacaatcatcagcaaataataggtgagatataa |
48028076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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