View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_11 (Length: 382)
Name: NF21455_low_11
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 37801595 - 37801240
Alignment:
| Q |
18 |
ctaactaccatcactgtaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaatt |
117 |
Q |
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| T |
37801595 |
ctaactaccatcactgcaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaatt |
37801496 |
T |
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| Q |
118 |
cttctaactactacataggaatatggtacaaaaaggtctttccgcaaacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgc |
217 |
Q |
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| T |
37801495 |
cttctaactactacataggaatatggtacaaaaatgtctttccacaaacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgc |
37801396 |
T |
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| Q |
218 |
taccttaaaaatttcagcgggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctacgttaggttctgttgta |
317 |
Q |
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| T |
37801395 |
taccttaaaaatttcagctggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctaagtcagattctgttgta |
37801296 |
T |
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| Q |
318 |
gctctcctcttagataccggcaatctcgttttaagaactaggcctaatgatgatgt |
373 |
Q |
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| T |
37801295 |
gctatgcttctagatactggaaatcttgttttaagacataggcctgatgatgatgt |
37801240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 37764163 - 37764512
Alignment:
| Q |
21 |
actaccatcactgtaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaattctt |
120 |
Q |
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| T |
37764163 |
actaccatctcagcaaaacaatctctatctggtgaccaaactcttatttctgaaggaggaa---tctttgaactaggtttcttcaaaccaggtaattcct |
37764259 |
T |
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| Q |
121 |
ctaactactacataggaatatggtacaaaaaggtctttccgcaaacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgctac |
220 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||| || || |
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| T |
37764260 |
ctaactactacataggaatatggtacaaaaaggtcattcaacaaacaattgtttgggtagccaacagagacaatcctgtctctgacaaaaacaccgccac |
37764359 |
T |
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| Q |
221 |
cttaaaaatttcagcgggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctacgttaggttctgttgtagct |
320 |
Q |
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||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||| || || |||||||||||| |
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| T |
37764360 |
cttaaaaatctcagatggtaatttagttatattaaatgagtcttcaaaacaagtttggtcaacaaacatgaatgttcctaagtcagattctgttgtagcc |
37764459 |
T |
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| Q |
321 |
ctcctcttagataccggcaatctcgttttaagaactaggcctaatgatgatgt |
373 |
Q |
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| T |
37764460 |
atgcttctagatactggaaatcttgttttgaaaaataggcctaatgatgatgt |
37764512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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