View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_2 (Length: 819)
Name: NF21455_low_2
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 356
Target Start/End: Original strand, 14010154 - 14010463
Alignment:
| Q |
32 |
atcgagttgaattaatctgaactcttcactttgaaaatggaatttacataaaacagtggaacatacaatacatcatttaataaaagagtaactattatag |
131 |
Q |
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| T |
14010154 |
atcgagttgaattaatctggattcttcactttgaaaatagaatttacataaaatagtggaacatacaatacatcatttaataaaagagtaactattatag |
14010253 |
T |
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| Q |
132 |
aaaatattcaaaagatagttttgctatcatttcactgttatatatattgttgaaattttttagttgattatattctcacgcttttcacccatgtcatggc |
231 |
Q |
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| T |
14010254 |
aaaatattcaaaagatagtgttgctatcgtttcactgttatatatattgttgaaattttttagttgattatattctcacgctttt--------------- |
14010338 |
T |
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| Q |
232 |
caatcgatgttgtttgtgtgaaagctattatgagatggaaagaaaaaggtgtggtgacacaaaaaagttgattataaatcgatttaactggagttgacac |
331 |
Q |
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| T |
14010339 |
caatcgatgttgtttgtgtgaaagctattatgagatggaaagaaaaaggtgtggtgacacaaaaaagttgattataaatcgatttaactggagttgacac |
14010438 |
T |
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| Q |
332 |
aaaaaagttgcatccttctttcaca |
356 |
Q |
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| T |
14010439 |
aaaaaaattgcatccttctttcaca |
14010463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 14010496 - 14010545
Alignment:
| Q |
377 |
aaattagtctgttcacaaattgtgaattattgataactttgattttaaat |
426 |
Q |
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| T |
14010496 |
aaattagtctgttcacaaattgtgaattattgataactttgattttaaat |
14010545 |
T |
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