View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_23 (Length: 243)
Name: NF21455_low_23
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 6391724 - 6391514
Alignment:
| Q |
17 |
attgatttctgtttctctcttcgcctaatcgacaattggtttgagtgtattgtgatattgtgtctatatacgatgccggatttgtgatgtttgaaatgtt |
116 |
Q |
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| T |
6391724 |
attgatttccgtttctatcttcgcctaatcgacaattggtttgagtgtattgtgatattgtgtctatatatgatgccggatttgtgatgtttgaaatgtt |
6391625 |
T |
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| Q |
117 |
aacaaaatagagataacaaaatagacaaaggagaaagagagtagggtttcaataatgtgaataacataacttatcaaaataagggttacaaaaagaatat |
216 |
Q |
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| T |
6391624 |
aacaaaatagagataacaaaatagacaaaggagaaagagagtagggtttcaataatgtgaataacacaacttatcaaaataagggttacaaaaagaatat |
6391525 |
T |
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| Q |
217 |
atagtaaaaac |
227 |
Q |
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| T |
6391524 |
atagtaaaaac |
6391514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 63729 - 63691
Alignment:
| Q |
158 |
tagggtttcaataatgtgaataacataacttatcaaaat |
196 |
Q |
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| T |
63729 |
tagggtttcaataatgcgaataacataacttatgaaaat |
63691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 40283469 - 40283530
Alignment:
| Q |
158 |
tagggtttcaataatgtgaataacataacttatcaaaataagggttacaaaaagaatatata |
219 |
Q |
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| T |
40283469 |
tagggtttcaataatgtgaatagcataacatgtgaaaataaggtttacaaagagaatgtata |
40283530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 30648363 - 30648303
Alignment:
| Q |
160 |
gggtttcaataatgtgaataacataacttatcaaaataagggttacaaaaagaatatatag |
220 |
Q |
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| T |
30648363 |
gggtttcattaatgtgaatagcataacttataaaaataatggttgcaaacaaaatatatag |
30648303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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