View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_25 (Length: 236)
Name: NF21455_low_25
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_25 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42519652 - 42519872
Alignment:
| Q |
1 |
ttttattatataaacagctaattttttatttatcgacaaaataaacaacttgagttaatatagatgctcatccatatttcgatcaaaagtttaaaataat |
100 |
Q |
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| T |
42519652 |
ttttattatataaacagctaagtttttatttatcgacaaaataaacaacttgagttaatatagatgctcatccatatttctatcaaaagtttaaaataat |
42519751 |
T |
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| Q |
101 |
aacatatattcttagatagacataaagacatttcttaatacaaatatacctaatcttaattttttagaatattgaaataaaccaaaaccttttcttaatt |
200 |
Q |
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| T |
42519752 |
aacatatattcttagatagacataaagacatttcttaatacaaatatacctaatcctaattttttagaatattgaaataaaccaaaaccttttcttaatt |
42519851 |
T |
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| Q |
201 |
tgtatttacgtatgttccttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42519852 |
tgtatttacgtatgttccttt |
42519872 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 1241520 - 1241595
Alignment:
| Q |
55 |
ttaatatagatgctcatccatatttcgatcaaaagtttaaaataataa---catatattcttaga-tagacataaa |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
1241520 |
ttaatatagatgctcatccatatttcgatcaaaagtttaaaataataatagtatatattcttagagtagacataaa |
1241595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 584 - 645
Alignment:
| Q |
159 |
attttttagaatattgaaataaaccaaaaccttttcttaatttgtatttacgtatgttcctt |
220 |
Q |
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| T |
584 |
atttttgagaatattgaaatcaaccaaaaccttttcttaatttgtatttacgtatgttcctt |
645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 41973276 - 41973337
Alignment:
| Q |
159 |
attttttagaatattgaaataaaccaaaaccttttcttaatttgtatttacgtatgttcctt |
220 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41973276 |
atttttgagaatattgaaatcaaccaaaaccttttcttaatttgtatttacgtatgttcctt |
41973337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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