View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_26 (Length: 231)
Name: NF21455_low_26
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 41744480 - 41744273
Alignment:
| Q |
13 |
agatgaataataaaataaagtacagagatgttgacg------cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtatt |
106 |
Q |
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| T |
41744480 |
agatgaataataaaataaagtacagagatgttgatgtagaaacgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtatt |
41744381 |
T |
|
| Q |
107 |
gatgggggtaatgatgaagaattttatgatcgtaaacaagagtaataaggagtaatgtcataaacatatatataaatacatatgatgagaaaagacgatg |
206 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41744380 |
gatgggggtaatgatgaagaattttatgaccataaacaagagtaatgaggactaatttcataaacatatatataaatacatatgatgagaaaagacgacg |
41744281 |
T |
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| Q |
207 |
tctatttt |
214 |
Q |
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|||||||| |
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| T |
41744280 |
tctatttt |
41744273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 18784973 - 18785090
Alignment:
| Q |
51 |
agtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagagta |
150 |
Q |
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| T |
18784973 |
agtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatgggggaaataataaagaatttattgactataaacaagagta |
18785072 |
T |
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| Q |
151 |
ataaggagtaatgtcata |
168 |
Q |
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| T |
18785073 |
ataagaagtaatgtcata |
18785090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 34635485 - 34635625
Alignment:
| Q |
58 |
tttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggta------atgatgaagaattttatgatcgtaaacaagagtaa |
151 |
Q |
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||||||||||| |||||| || ||| || ||||||||||||||| | |||||||||| | |||||||||| ||||| || | || ||||||| | |
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| T |
34635485 |
tttatgaattgaattaataaaaaga-taaggtagtgatataaacttcttgatggggggaggggggatgatgaagagttttacga-ctcaatcaagagtga |
34635582 |
T |
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| Q |
152 |
taaggagtaatgtcataaacatatatataaatacatatgatga |
194 |
Q |
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| ||| ||||||||||| || |||||||||||||||||||||| |
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| T |
34635583 |
tgaggggtaatgtcatatacttatatataaatacatatgatga |
34635625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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