View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_28 (Length: 226)
Name: NF21455_low_28
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 13122414 - 13122615
Alignment:
| Q |
9 |
gggcagttatcatcttcttccatatccatgattacaaaatcaacagagaagacggatttgtcaacctgttcaaagacatcttcaactactccatatgtgt |
108 |
Q |
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| T |
13122414 |
gggcaattatcatcttcttccatatccatgattacaaaatcaacagagaagacggatttgtcaacctgttccaagacatcttcaactactccatatgtgt |
13122513 |
T |
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| Q |
109 |
acttgacagatcggtctgccagataaaatgttattctttcatgtttaatggttatcccttcaagatttttcatcatagaaagtggcaccaaaccaatact |
208 |
Q |
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| T |
13122514 |
acttgacagatcggtctgccagataaaatgttattctt----------------tcccttcaagatttttcatcatagaaagtggcttcaaaccaatact |
13122597 |
T |
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| Q |
209 |
ctctcctagatcggacaa |
226 |
Q |
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|||||||||||||||||| |
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| T |
13122598 |
ctctcctagatcggacaa |
13122615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 13092453 - 13092670
Alignment:
| Q |
9 |
gggcagttatcatcttcttccatatccatgattacaaaatcaacagagaagacggatttgtcaacctgttcaaagacatcttcaactactccatatgtgt |
108 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| | | | | ||||||||||||| ||||||||||| || |
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| T |
13092453 |
gggcagtcatcatctacttccatatccatgattacaaaatcaacagggaagacgaatttgtcaccatataccaagacatcttcaattactccatatgggt |
13092552 |
T |
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| Q |
109 |
acttgacagatcggtctgccagataaaatgttattctttcatgtttaatggttatcccttcaagatttttcatcatagaaagtggcaccaaaccaatact |
208 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||| | |||| ||||||||||||||||||||| ||| || |||| ||||||| |
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| T |
13092553 |
acttgacagatcggtctgccagataaagaattattttttcaagtttaacgattattccttcaagatttttcatcataatgtgtgtcatcaaaacaatact |
13092652 |
T |
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| Q |
209 |
ctctcctagatcggacaa |
226 |
Q |
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||||||||||||| |||| |
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| T |
13092653 |
ctctcctagatcgcacaa |
13092670 |
T |
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