View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_3 (Length: 679)
Name: NF21455_low_3
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 9 - 660
Target Start/End: Original strand, 29837737 - 29838388
Alignment:
| Q |
9 |
tgtcgaagaatataattgaacggctatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaag |
108 |
Q |
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| T |
29837737 |
tgtcgaagaatataatcgaacggatatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaag |
29837836 |
T |
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| Q |
109 |
tgttactcaacatggttagttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatctgtgtcgtttgatttcat |
208 |
Q |
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| T |
29837837 |
tgttactcaacatggttagttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatcggtgtcgtgtgatttcat |
29837936 |
T |
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| Q |
209 |
cttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtatatcttgtgtttgttc |
308 |
Q |
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| T |
29837937 |
cttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtaaatcttgtgtttgttc |
29838036 |
T |
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| Q |
309 |
gttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaagtactg |
408 |
Q |
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| T |
29838037 |
gttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaaatactg |
29838136 |
T |
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| Q |
409 |
attattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaa |
508 |
Q |
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| T |
29838137 |
attattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaa |
29838236 |
T |
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| Q |
509 |
ttcatacatatttttgagtttaatttacttcctatagagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgt |
608 |
Q |
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| T |
29838237 |
ttcatacatatttttgagtttaatttacttcctatagagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgt |
29838336 |
T |
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| Q |
609 |
ctaatgcttggtatgaggtgttgtcggttttgcatttgatgtcaatgctatt |
660 |
Q |
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| T |
29838337 |
ctaatgcttggtatgaggtgttgtcggttttgcatttgatgtcaatgctatt |
29838388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 34628785 - 34628690
Alignment:
| Q |
33 |
tatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaagtgttactcaacatggttagt |
128 |
Q |
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| T |
34628785 |
tatctgctcttagaactcgtatcgttgtaatggctggtcaagaaggtcctacaattacaagaacaaaaagaaaaagtgcaactcaacatggttagt |
34628690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 34628626 - 34628535
Alignment:
| Q |
201 |
gatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggta |
292 |
Q |
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| T |
34628626 |
gatttcatcctcaggaggttcaacactggctgatcttctacaggctcttgaagactacttaccggtacttttgggattagtcaaagatggta |
34628535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 649
Target Start/End: Complemental strand, 34628284 - 34628228
Alignment:
| Q |
593 |
caggaaacaaccatgtctaatgcttggtatgaggtgttgtcggttttgcatttgatg |
649 |
Q |
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| T |
34628284 |
caggaaacagccatgtctaatgcttggtatgaagtgttgtcagtcttgcacttgatg |
34628228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 34628451 - 34628391
Alignment:
| Q |
438 |
aagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggta |
498 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || || |||||| ||||||| |
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| T |
34628451 |
aagtcatttacaatacaaagtacaatttgtttggatgaatcaggaggatgaagcagaggta |
34628391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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