View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_30 (Length: 226)
Name: NF21455_low_30
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43369159 - 43369378
Alignment:
| Q |
1 |
tgtaatcgaaggctatttgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43369159 |
tgtaatcgaaggctatttgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagc |
43369258 |
T |
|
| Q |
101 |
ggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43369259 |
ggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcc |
43369358 |
T |
|
| Q |
201 |
tgtgcctttttgcaatattt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43369359 |
tgtgcctttttgcaatattt |
43369378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 43365028 - 43365226
Alignment:
| Q |
18 |
tgcagcacatgccaacccacatagcatttttgtgtctatcttgacgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacga |
117 |
Q |
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||||||||| |||||| |||| ||||| |||||||||||||| |||||| |||||||||| | |||| ||||||||| |||||||||||||||| || || |
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| T |
43365028 |
tgcagcacacgccaactcacagagcatatttgtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatga |
43365127 |
T |
|
| Q |
118 |
aatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaat |
216 |
Q |
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| T |
43365128 |
aatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactgcacaattcttggaagatcccatgcctttttgcaat |
43365226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 11366812 - 11366681
Alignment:
| Q |
89 |
ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt |
188 |
Q |
| |
|
|||||| |||||||||| || || || |||||||||| |||| ||||||||||||| ||||| || ||| || ||||||||||||||| ||||||||| |
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| T |
11366812 |
ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt |
11366713 |
T |
|
| Q |
189 |
cttggaagatcctgtgcctttttgcaatattt |
220 |
Q |
| |
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|||||||| ||| |||||||||| ||||||| |
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| T |
11366712 |
cttggaagttccattgcctttttgtaatattt |
11366681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 1349970 - 1349866
Alignment:
| Q |
116 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa |
215 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| ||| ||||| ||| || ||||||||||||||| ||| | || ||||| ||||||| || |||||||| || |
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| T |
1349970 |
gaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactcttgcaagatccagttcctttttgtaa |
1349871 |
T |
|
| Q |
216 |
tattt |
220 |
Q |
| |
|
||||| |
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|
| T |
1349870 |
tattt |
1349866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 1360628 - 1360533
Alignment:
| Q |
116 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgccttttt |
211 |
Q |
| |
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||||| ||||||||| |||||||||| || |||||| | ||| || | || |||||||||| ||||| || |||||||||||||||| ||||||| |
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| T |
1360628 |
gaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactcttggaagatcctgtcccttttt |
1360533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 1343524 - 1343439
Alignment:
| Q |
116 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct |
201 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||| || | | || ||||||||||||||| ||| | || |||||||||||||| |
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| T |
1343524 |
gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
1343439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 1356063 - 1356148
Alignment:
| Q |
116 |
gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct |
201 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||| || | | || ||||||||||||||| ||| | || |||||||||||||| |
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| T |
1356063 |
gaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
1356148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 24617998 - 24617858
Alignment:
| Q |
61 |
acgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaa |
160 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| |||| ||||| || | || |||||||||||||| |||||||||| | |||||| || | | | |
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|
| T |
24617998 |
acgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtga |
24617899 |
T |
|
| Q |
161 |
cctgttgaggaagacatgttgcacaattcttggaagatcct |
201 |
Q |
| |
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| ||||||||||||||| ||| | || |||||||||||||| |
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| T |
24617898 |
cttgttgaggaagacatattggagaagtcttggaagatcct |
24617858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 29389250 - 29389373
Alignment:
| Q |
89 |
ccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaatt |
188 |
Q |
| |
|
|||||| ||||||||||||| || || |||| |||||||||| ||||| ||||||| |||| | || | || | || |||||||||| | |||||||| |
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| T |
29389250 |
ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt |
29389349 |
T |
|
| Q |
189 |
cttggaagatcctgtgcctttttg |
212 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
29389350 |
tttggaagatcccgtgcctttttg |
29389373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 13590047 - 13589914
Alignment:
| Q |
87 |
ttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaa |
186 |
Q |
| |
|
|||||||||||||| |||| || | || ||||| ||||||| | ||||||| || || |||||| |||||| |||| || |||||||||| ||||| | |
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| T |
13590047 |
ttccttgtctgagcagcctcgtacccgatgaaattgacaatattcaagaattgagttcaacattgcagaacttacctctttaggaagacatattgcagag |
13589948 |
T |
|
| Q |
187 |
ttcttggaagatcctgtgcctttttgcaatattt |
220 |
Q |
| |
|
||| |||| |||| | |||||||||||||||| |
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|
| T |
13589947 |
ctctcggaaaatcccatccctttttgcaatattt |
13589914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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