View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21455_low_6 (Length: 484)
Name: NF21455_low_6
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 10348738 - 10349166
Alignment:
| Q |
22 |
cgtataaaaattacatctagaagcaaccataaactaagggaataaaggataaatagtgaaggaaaaagaaaaatgtgtagagtagagtcattgatgaaca |
121 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
10348738 |
cgtataaaaattacatccagaagcaacaataaactaagggaataaaggataaatagtgaaagaaaaagaaaaatgtgtagagtagtgtcattgatgaaca |
10348837 |
T |
|
| Q |
122 |
aactaccaggtgaaatatcctaataaactgcagattcatgttatttgtaaatatatatgcttcatgttattcaagaggctttagtcctgaattgatcaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10348838 |
aactaccaggtgaaatatcctaataaactgcagattcatgttatttgtaaatatatatgcttcatgttattcaagaggctttagtcctgaattgatcaca |
10348937 |
T |
|
| Q |
222 |
tcaaagcttcttctagtttggcacaagctagttccttctaaagttgcactctttgcgtggcggctacttcaagacaaagttccatctagagcaaatttga |
321 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10348938 |
tcaaagcttcttctagtttagcacatgctagttccttctaaacttgcactctttgcgtggcggctacttcaagacaaagtttcatctagagcaaatttgg |
10349037 |
T |
|
| Q |
322 |
tgcgaagacatgttatccaacctaacggtatcctttgtgctggtgggtgtggaaacattgagacgacagatcatctttcccttggttgtaacctttttgg |
421 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||| |
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| T |
10349038 |
tgcaaagacatgttatccaacctaacggtatcctttgtgctggtgggtgtggaaacattgagacggcggatcatcttttccttggttgtaatctttttgg |
10349137 |
T |
|
| Q |
422 |
aaatgtttggtatttaatttgtaattggc |
450 |
Q |
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| T |
10349138 |
aaatgtttggtatttaatttgtaattggc |
10349166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 456
Target Start/End: Original strand, 11798172 - 11798342
Alignment:
| Q |
286 |
tacttcaagacaaagttccatctagagcaaatttgatgcgaagacatgttatccaacctaacggtatcctttgtgctggtgggtgtggaaacattgagac |
385 |
Q |
| |
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|||||||||| | ||||||| | |||| |||||| || |||||||||| | ||||| || | || ||| |||| | |||||||||||| ||||| |
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| T |
11798172 |
tacttcaagatagagttccaaccagagttaatttggtgaaaagacatgttctacaaccgaatgataacctgtgtgtcgatgggtgtggaaattcagagac |
11798271 |
T |
|
| Q |
386 |
gacagatcatctttcccttggttgtaacctttttggaaatgtttggtatttaatttgtaattggcgtgaca |
456 |
Q |
| |
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||| ||||||||| | ||||||| ||| ||||||| | |||||||||||| ||||||||||||| ||||| |
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| T |
11798272 |
gacgtatcatcttttcattggttgcaacatttttgggagtgtttggtatttgatttgtaattggcttgaca |
11798342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 240 - 450
Target Start/End: Complemental strand, 41242820 - 41242610
Alignment:
| Q |
240 |
tggcacaagctagttccttctaaagttgcactctttgcgtggcggctacttcaagacaaagttccatctagagcaaatttgatgcgaagacatgttatcc |
339 |
Q |
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||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
41242820 |
tggcacaagttagttccttctaaagttgctctctttgtgtggcggctacttcaagacaaagttccaactagagcaaatttggtgcgaagaaatgttatcc |
41242721 |
T |
|
| Q |
340 |
aacctaacggtatcctttgtgctggtgggtgtggaaacattgagacgacagatcatctttcccttggttgtaacctttttggaaatgtttggtatttaat |
439 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
41242720 |
aacctaacggtattctatgtgctggtgggtgtggaaacattgagacagcggatcatctttttcttggttgtaacctttttggaagtgtttggtacttaat |
41242621 |
T |
|
| Q |
440 |
ttgtaattggc |
450 |
Q |
| |
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||||||||||| |
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| T |
41242620 |
ttgtaattggc |
41242610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 450
Target Start/End: Complemental strand, 40452472 - 40452272
Alignment:
| Q |
250 |
tagttccttctaaagttgcactctttgcgtggcggctacttcaagacaaagttccatctagagcaaatttgatgcgaagacatgttatccaacctaacgg |
349 |
Q |
| |
|
|||| |||||||||||| | | ||||| ||||| ||||||||||| | ||||||| | |||| ||||| || ||||||||||| | ||||| ||||| |
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| T |
40452472 |
tagtcccttctaaagtttctgtttttgcatggcgactacttcaagatagagttccaacaagagttaattttgtgagaagacatgttctacaaccgaacgg |
40452373 |
T |
|
| Q |
350 |
tatcctttgtgctggtgggtgtggaaacattgagacgacagatcatctttcccttggttgtaacctttttggaaatgtttggtatttaatttgtaattgg |
449 |
Q |
| |
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| ||| |||| |||||||||||||| | ||| | ||||| |||||| | |||| || ||| ||||||| | |||||||||||| |||||||||||| |
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| T |
40452372 |
caacctgtgtgtcggtgggtgtggaaatttagagcctgcagattatcttttcattggctgcaacatttttgggagtgtttggtatttgatttgtaattgg |
40452273 |
T |
|
| Q |
450 |
c |
450 |
Q |
| |
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| |
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| T |
40452272 |
c |
40452272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 449
Target Start/End: Complemental strand, 22859288 - 22859076
Alignment:
| Q |
237 |
gtttggcacaagctagttccttctaaagttgcactctttgcgtggcggctacttcaagacaaagttccatctagagcaaatttgatgcgaagacatgtta |
336 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| || |||||||||||||| ||||||||||| || |
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| T |
22859288 |
gtttggcataagctagttccttctaaagttgctctctttgcatggcggctacttcaagataaagtttcaactagagcaaatttggtgcgaagacatattt |
22859189 |
T |
|
| Q |
337 |
tccaacctaacggtatcctttgtgctggtgggtgtggaaacattgagacgacagatcatctttcccttggttgtaacctttttggaaatgtttggtattt |
436 |
Q |
| |
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|||||| |||||||| | | |||| ||||||| |||||||||||||||||| ||||||||| |||| |||| ||||||||||| | ||||||||| || |
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| T |
22859188 |
tccaacttaacggtaacttgtgtgtcggtgggtatggaaacattgagacgacgaatcatcttttccttagttgcaacctttttgggagtgtttggtactt |
22859089 |
T |
|
| Q |
437 |
aatttgtaattgg |
449 |
Q |
| |
|
||||||||||||| |
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| T |
22859088 |
aatttgtaattgg |
22859076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 450
Target Start/End: Complemental strand, 13160360 - 13160147
Alignment:
| Q |
237 |
gtttggcacaagctagttccttctaaagttgcactctttgcgtggcggctacttcaagacaaagttccatctagagcaaatttgatgcgaagacatgtta |
336 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| || ||||| | ||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| | |
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| T |
13160360 |
gtttggcataagctggttacttctaaagtagctctcttcacatggcggctacttcaagacaaaattccaactagagcaaatttggtgtgaagacatgctc |
13160261 |
T |
|
| Q |
337 |
tccaacctaacggtatcctttgtgctggtgggtgtggaaacattgagacgacagatcatctttcccttggttgtaacctttttggaaatgtttggtattt |
436 |
Q |
| |
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||||||||||||||| ||| ||| |||||||||||||||||| |||||| | |||||||||| ||||||||| ||||||||||||| ||||||||| || |
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| T |
13160260 |
tccaacctaacggtaacctgtgtattggtgggtgtggaaacatggagacggcggatcatcttttccttggttgcaacctttttggaagtgtttggtactt |
13160161 |
T |
|
| Q |
437 |
aatttgtaattggc |
450 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
13160160 |
aatttgtagttggc |
13160147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 7639381 - 7639333
Alignment:
| Q |
402 |
cttggttgtaacctttttggaaatgtttggtatttaatttgtaattggc |
450 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
7639381 |
cttggttgtaacctttttggaagtgtttggtacttaatttgtaattggc |
7639333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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