View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21455_low_7 (Length: 442)
Name: NF21455_low_7
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_7 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 427
Target Start/End: Original strand, 20275199 - 20275625
Alignment:
| Q |
2 |
gactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnnn |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
20275199 |
gactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgagtaaggacttggatttaattaattttttt |
20275298 |
T |
|
| Q |
102 |
-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20275299 |
tagcgctttgaagatgttgtagaagaaaagcagtataaataattgaagtgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatattct |
20275398 |
T |
|
| Q |
201 |
gatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatgg |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20275399 |
gatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatgg |
20275498 |
T |
|
| Q |
301 |
acatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgctc |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20275499 |
acatacaaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgctc |
20275598 |
T |
|
| Q |
401 |
ttgtcgtaaatttgagagctttgacat |
427 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
20275599 |
ttgtcgtaaatttgagagttttgacat |
20275625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 465818 - 465396
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
465818 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
465719 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
465718 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
465620 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
465619 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
465520 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
465519 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
465420 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
465419 |
cttgtcgtaaatttgaaagctttg |
465396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 52055227 - 52054805
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
52055227 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
52055128 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
52055127 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
52055029 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
52055028 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
52054929 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52054928 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
52054829 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
52054828 |
cttgtcgtaaatttgaaagctttg |
52054805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 53574837 - 53574415
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
53574837 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
53574738 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
53574737 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
53574639 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
53574638 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
53574539 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53574538 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
53574439 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
53574438 |
cttgtcgtaaatttgaaagctttg |
53574415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 30199982 - 30199560
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
30199982 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
30199883 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
30199882 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
30199784 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
30199783 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
30199684 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30199683 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
30199584 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
30199583 |
cttgtcgtaaatttgaaagctttg |
30199560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 26028382 - 26028313
Alignment:
| Q |
4 |
ctttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaa |
73 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
26028382 |
cttttacattaggaatgcgcagcacccaacttagtgaaagtgtgaatgcaactattaaaagttttatgaa |
26028313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 26028014 - 26027963
Alignment:
| Q |
372 |
gatttggaaaagaatacaatttgttgctcttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||| |||||| | ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
26028014 |
gatttggataagaattcgattagttgctcttgtcgtaagtttgagagctttg |
26027963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 31354640 - 31355062
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
31354640 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
31354739 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31354740 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
31354838 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31354839 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
31354938 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31354939 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
31355038 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
31355039 |
cttgtcgtaaatttgaaagctttg |
31355062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 16991927 - 16992349
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
16991927 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
16992026 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
16992027 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
16992125 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
16992126 |
tgatattttgcaacaagtgtccaagctttatactcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
16992225 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16992226 |
gacatacaaacatcattatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
16992325 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
16992326 |
cttgtcgtaaatttgaaagctttg |
16992349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 35897102 - 35897524
Alignment:
| Q |
1 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaattaannnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
35897102 |
agactttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgtagatattaaaaattttatgagtaagaacttggatttaattaaattttt |
35897201 |
T |
|
| Q |
101 |
n-agcgctttgaagatgttgtagaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatatta |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
35897202 |
tgagcgttttgaagatgttgtagaagaaaagcggtataaagaattgaagtgtgaatttgaagcacgccaaaaaattcc-aagactgaagaactcatattc |
35897300 |
T |
|
| Q |
200 |
tgatatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatg |
299 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
35897301 |
tgatattttgcaacaagtgtccaagctttataatcctactattttcgacttattccaacgtgagtatgagttgtttgaagcatgctttgtgaaaagcatg |
35897400 |
T |
|
| Q |
300 |
gacatataaacatcatcatctacttatgtaattgctaggaaaaggaatatggaagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35897401 |
gacatacaaacatcatcatctacttatgttattgccaagaaaaggaatatgggagaatggcaagtgaccttcgatttggaaaagaatacaatttgttgct |
35897500 |
T |
|
| Q |
400 |
cttgtcgtaaatttgagagctttg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
35897501 |
cttgtcgtaaatttgaaagctttg |
35897524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 39853627 - 39853330
Alignment:
| Q |
22 |
gaagcactcaacttagtgaaagtgtgaatgcaaatattaaaaaatttatgaatagggacttggatttaat-taannnnnnnagcgctttgaagatgttgt |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| || ||| |||| || ||| |||||||| | |||| |
|
|
| T |
39853627 |
gaagcacccaacttagtgaaagtgtgaatgcggatattaaaagttttatgagcgtggatttcgatataatcaaatttttcaagcactttgaagttattgt |
39853528 |
T |
|
| Q |
121 |
agaagaaaagcagtataaataattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatattatgatatttttcaacaagtgtc |
220 |
Q |
| |
|
||||||||||| |||||| | |||||| |||||| |||| |||||||||||| |||||||| |||||||||||| | |||| ||||||||| |||| |
|
|
| T |
39853527 |
agaagaaaagcgatataaagagttgaagtgtgaatatgaaacacgccaaaaaaaatccaagactcaagaactcatatcctcatatctttcaacaaatgtc |
39853428 |
T |
|
| Q |
221 |
caagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatggacatataaacatcatcat |
318 |
Q |
| |
|
|| |||||||||| | ||| || || ||||||| | ||||||| |||||||| || || |||||| | |||||| ||||| |||||||||||| |
|
|
| T |
39853427 |
tgagatttatactcccattatctttgatctattccaacatgagtatcagttgtttgaaatctgttttgtgaagagcatgaacatacaaacatcatcat |
39853330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 23303394 - 23303282
Alignment:
| Q |
202 |
atatttttcaacaagtgtccaagctttatactcctactattttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcatgga |
301 |
Q |
| |
|
||||||| ||| | |||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||||| | ||||||| || |||||||||| |
|
|
| T |
23303394 |
atattttacaaaaggtgtccgagctttatactc-tactattttcgacttattccaacgtgagtatgagctgtttgaggcatgctatggtaaaagcatgga |
23303296 |
T |
|
| Q |
302 |
catataaacatcat |
315 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
23303295 |
catacaaatatcat |
23303282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 6639392 - 6639451
Alignment:
| Q |
4 |
ctttgacattagggatgcgaagcactcaacttagtgaaagtgtgaatgcaaatattaaaa |
63 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6639392 |
cttttacattaggcatgcgaagtactcaactaagtgaaagtgtgaatgcagatattaaaa |
6639451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 298
Target Start/End: Original strand, 6639530 - 6639686
Alignment:
| Q |
141 |
aattgaagcgtgaatttgaagcacgccaaaaaattcccaagactaaagaactcatattatgatatttttcaacaagtgtccaagctttatactcctacta |
240 |
Q |
| |
|
||||||| |||||| |||||||||| |||| ||||| | |||| ||||||||||||| |||| || || |||||||| |||||||| || || |||| |
|
|
| T |
6639530 |
aattgaaatgtgaatatgaagcacgctaaaagattccga-gactgaagaactcatattcacatatcttccagcaagtgtctaagctttacacccccacta |
6639628 |
T |
|
| Q |
241 |
ttttcgacttattccatcgtgagtatgagttgtttaaagcatgctttgtgcaaagcat |
298 |
Q |
| |
|
|||| | |||||| | |||||||||||||||| || |||| |||||| ||||||| |
|
|
| T |
6639629 |
ttttttatcaattccaacatgagtatgagttgtttgaaccatgttttgtgaaaagcat |
6639686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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