View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21455_low_9 (Length: 430)
Name: NF21455_low_9
Description: NF21455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21455_low_9 |
 |  |
|
| [»] scaffold0533 (1 HSPs) |
 |  |  |
|
| [»] scaffold0285 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 21122003 - 21121604
Alignment:
| Q |
16 |
aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatactcctgtctccaattataag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122003 |
aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatactcctgtctccaattataag |
21121904 |
T |
 |
| Q |
116 |
ataatttacaaaaagttttgtcgataaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21121903 |
ataatttacaaaaagttttgtcgataaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatc |
21121804 |
T |
 |
| Q |
216 |
aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatgagacaaatttattact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21121803 |
aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatgagacaaatttattact |
21121704 |
T |
 |
| Q |
316 |
ccgacattttttcttttaacattcgtgatttttgttacaggagacccagggagtatatgattaagtcacatatatcatatgtctaatactacgggagaat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21121703 |
ccgacattttttcttttaacattcgtgatttttgttacaggagacccagggagtatatgattaagtcacatatatcatatgtctaatactacgggagaat |
21121604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 52259208 - 52259301
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||||||||| ||||||||| | |||||| | ||| |||||||||| ||| |||| | ||||||| ||||||| | |||||||||||||||| |
|
|
| T |
52259208 |
atttctagatgcatttattactctttttcccagtataccccttattaatactatcattgtatcttggaatatgataggttaacattaaatatat |
52259301 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21114576 - 21114508
Alignment:
| Q |
16 |
aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatca |
84 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| | |||| ||| |||||| ||||||||||| |||| |
|
|
| T |
21114576 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaattagtcaaagatccatca |
21114508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 42314050 - 42314135
Alignment:
| Q |
173 |
atttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||| || |||||| || ||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
42314050 |
atttattactctttttccaaatacacccctcattaatattatcaatataccttgaaatatg-aaagttaacattaaatatctctata |
42314135 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 19531772 - 19531870
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
|||| |||||| ||||||||| | ||||||||| || |||||||||| |||||||||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
19531772 |
atttttagatacatttattactctttttccaaacataccccttattagtaccatcaatgtatcttgaaatatgaaaagatagcattaaatacatctata |
19531870 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 23719059 - 23719103
Alignment:
| Q |
213 |
atcaatttatcttgaaatatgaaaaattaacattaaatatatcta |
257 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23719059 |
atcaatatatattgaaatatgaaaaattaacattaaatatatcta |
23719103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 36478730 - 36478662
Alignment:
| Q |
190 |
caaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctat |
258 |
Q |
| |
|
||||||| | |||||||| || ||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36478730 |
caaatatactccttattaatattatcgatatatcttgaaatatgaaaagttaacattaaatatatctat |
36478662 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 48030251 - 48030325
Alignment:
| Q |
185 |
ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
|||| ||||||| ||||||||| ||| | ||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
48030251 |
tttttcaaatatatcccttattaatactacaaatttatcttggaatatgaaaagttaacattgaatatatctata |
48030325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 13141491 - 13141445
Alignment:
| Q |
213 |
atcaatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
|||||| || ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13141491 |
atcaatataccttgaaatatgaaaagttaacattaaatatctctata |
13141445 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 29892935 - 29892866
Alignment:
| Q |
185 |
ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||| ||||||| |||||||||| ||| | |||||| | ||| ||||||||| |||||||||||||||| |
|
|
| T |
29892935 |
tttttcaaatataccccttattaatactaccaatttgttttggtatatgaaaagttaacattaaatatat |
29892866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 30862068 - 30861976
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatata |
253 |
Q |
| |
|
||||||||||| ||||||||| | ||||| ||||| || ||||||| || | |||||| | ||| ||||||||||||| ||||||||||| |
|
|
| T |
30862068 |
atttctagatacatttattactctttttcaaaatacacctcttattaatattaccaatttgttttggtatatgaaaaattatcattaaatata |
30861976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 30977514 - 30977614
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac |
260 |
Q |
| |
|
|||||||||| |||||||||| | |||||||| ||| || | |||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
30977514 |
atttctagatgtatttattactccttttccaactataccattgattaatactatcaatttatcttgaaatacgaaaagttaatattaaatatatctatac |
30977613 |
T |
 |
| Q |
261 |
a |
261 |
Q |
| |
|
| |
|
|
| T |
30977614 |
a |
30977614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 26855221 - 26855307
Alignment:
| Q |
174 |
tttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac |
260 |
Q |
| |
|
|||||||| | | ||||| ||||||||||||||| | | |||||| ||||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
26855221 |
tttattactcttattccacatatgccccttattaattctatcaatgtatcttggaatatgaaaagttaacattgaatatatctatac |
26855307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 3389372 - 3389319
Alignment:
| Q |
207 |
attaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac |
260 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3389372 |
attactatcaatgtatcttgaaatatgaaaaactaacattaaatatatctatac |
3389319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 31606355 - 31606281
Alignment:
| Q |
183 |
cattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatcta |
257 |
Q |
| |
|
||||||||| | ||| | ||||||| ||| ||||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
31606355 |
cattttccacacatgtctcttattaatactatcaatttatcatgaaatgtgaaatattaacattaaatatatcta |
31606281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 27494958 - 27494919
Alignment:
| Q |
220 |
tatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27494958 |
tatcttgaaatatgaaaaattaacattaaatatatttata |
27494919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 31642876 - 31642958
Alignment:
| Q |
275 |
atttagtaatattcacacacacatgagacaaatttattactccgacattttttcttttaacattcgtgatttttgttacagga |
357 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||| ||||||||| ||| |||||| |||| | ||||||||||||||| |||| |
|
|
| T |
31642876 |
atttggtaatagtcacacatatttgagacaaatgtattactccaacaacttttctcttaatactcgtgatttttgttaaagga |
31642958 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 34631264 - 34631350
Alignment:
| Q |
174 |
tttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac |
260 |
Q |
| |
|
|||||||| | | ||||| ||||||||||||||| | | |||||| ||||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
34631264 |
tttattactcttattccacatatgccccttattaattctatcaatgtatcttggaatatgaaaacttaacattgaatatatctatac |
34631350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 21813969 - 21813917
Alignment:
| Q |
278 |
tagtaatattcacacacacatgagacaaatttattactccgacattttttctt |
330 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
21813969 |
tagtaataatcacacacatttgagacaaatttattactccaacaacttttctt |
21813917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0533 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0533
Description:
Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 3235 - 3184
Alignment:
| Q |
216 |
aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatga |
268 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
3235 |
aatttatcttgaaatatgaaaaa-taacattaaatatatttatacacaaatga |
3184 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 9791966 - 9792005
Alignment:
| Q |
213 |
atcaatttatcttgaaatatgaaaaattaacattaaatat |
252 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9791966 |
atcaatatatcttgaaatatgaaaaattaacattaaatat |
9792005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 21120133 - 21120221
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaa |
249 |
Q |
| |
|
|||||||||| |||| ||||| | |||||||||||| |||||||||| ||| | ||||| |||||| |||| |||| |||| |||||| |
|
|
| T |
21120133 |
atttctagatgtattgattactctttttccaaatataccccttattaatactaataatttgtcttgatatatcaaaagttaatattaaa |
21120221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 37090607 - 37090537
Alignment:
| Q |
191 |
aaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctataca |
261 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||| |||||| |||| |||| ||||||||||| |||||| |
|
|
| T |
37090607 |
aaatataccccttattaatactttcaatgtatcttaaaatataaaaatttaatattaaatatatttataca |
37090537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 8525631 - 8525700
Alignment:
| Q |
185 |
ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||| ||||||| |||||||||| ||| |||||||| ||||| ||||||||| ||| ||||||||||| |
|
|
| T |
8525631 |
ttttgcaaatataccccttattaatactatcaatttgtcttggtatatgaaaagttagaattaaatatat |
8525700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 2752491 - 2752448
Alignment:
| Q |
216 |
aatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2752491 |
aatttatcttgaaatataaaaaattaacattgaatatatctata |
2752448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 38639419 - 38639311
Alignment:
| Q |
161 |
atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaattta-tcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
|||||||||| ||||||| || | |||| ||| || |||||||||| ||| |||||| || | |||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
38639419 |
atttctagatgtatttatcactcttttttaaaa-ataccccttattaatactatcaatataattttgagatatgaaaagttaacattaaatgtatctata |
38639321 |
T |
 |
| Q |
260 |
caaaaatgac |
269 |
Q |
| |
|
|| ||||||| |
|
|
| T |
38639320 |
cacaaatgac |
38639311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 328507 - 328422
Alignment:
| Q |
173 |
atttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata |
259 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||| || |||||| || ||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
328507 |
atttattactctttttccaaatacacccctcattaatattatcaatataccttgaaatatg-aaagttaacattaaatatctctata |
328422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 897347 - 897264
Alignment:
| Q |
166 |
tagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaat |
250 |
Q |
| |
|
||||| |||||||||| | ||||||||||| || |||||| ||| ||| |||||||||| |||||| |||| ||||||||||| |
|
|
| T |
897347 |
tagatttatttattactctttttccaaatacaccatttattaatactatctatttatcttggaatatg-aaaagtaacattaaat |
897264 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 45218435 - 45218504
Alignment:
| Q |
185 |
ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||||||||||| |||||||||| || | |||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
45218435 |
ttttccaaatataccccttattaatattaccaatttgtcttggtatatgaaaagttaacattaaatatat |
45218504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 14811220 - 14811289
Alignment:
| Q |
185 |
ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||| ||||| | |||||||||| ||| |||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
14811220 |
tttttcaaatttaccccttattaatactatcaatttgtcttgatatatgaaaaattattattaaatatat |
14811289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 4523928 - 4524022
Alignment:
| Q |
140 |
taaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatga |
234 |
Q |
| |
|
|||||||||||| | ||| | ||| |||||| |||||| || | |||||||| ||| |||||||||| ||||||| | |||||||| ||||||| |
|
|
| T |
4523928 |
taaatataagactcgctacaaattactagatgcatttatcactctttttccaattataccccttattaataccatctaattatcttggaatatga |
4524022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 18615797 - 18615744
Alignment:
| Q |
201 |
cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
||||||| ||| |||||||| ||| || ||||||||| |||||||||||||||| |
|
|
| T |
18615797 |
cttattaatactatcaatttgtctcgagatatgaaaagttaacattaaatatat |
18615744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 4524057 - 4524113
Alignment:
| Q |
274 |
aatttagtaatattcacacacacatgagacaaatttattactccgacattttttctt |
330 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||| ||| ||||||| |
|
|
| T |
4524057 |
aatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttctt |
4524113 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 13187 - 13228
Alignment:
| Q |
213 |
atcaatttatcttgaaatatgaaaaattaacattaaatatat |
254 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
13187 |
atcaatgtatcttgaaatatgaaaagttaacattgaatatat |
13228 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University