View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_11 (Length: 319)
Name: NF21456_high_11
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 6186489 - 6186757
Alignment:
| Q |
29 |
gcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcat |
128 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186489 |
gcttcatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcat |
6186588 |
T |
|
| Q |
129 |
cagcaataattccaataatcgcattcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaa |
228 |
Q |
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||||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||| || |||||||| |
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| T |
6186589 |
cagcaataattccaataattgcattcatcacatcatcaaaactcgtctttctaccattgaattctctaactccggcatcagtctttgtattcccggtgaa |
6186688 |
T |
|
| Q |
229 |
atatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
297 |
Q |
| |
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|||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186689 |
atatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
6186757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 4243433 - 4243701
Alignment:
| Q |
29 |
gcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||| |
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| T |
4243433 |
gcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcat |
4243532 |
T |
|
| Q |
129 |
cagcaataattccaataatcgcattcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaa |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
4243533 |
cagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaa |
4243632 |
T |
|
| Q |
229 |
atatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
297 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||| |||||| |||||||||| |||||||| || ||||| |
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| T |
4243633 |
atatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgt |
4243701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
69 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
127 |
Q |
| |
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|||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||| |
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|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
40 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
101 |
Q |
| |
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||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 38358107 - 38358195
Alignment:
| Q |
32 |
tgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagt |
120 |
Q |
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||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||||||||||||| || ||||| || |||||||| |
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| T |
38358107 |
tgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggcaaaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
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