View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_12 (Length: 319)
Name: NF21456_high_12
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 38604697 - 38604394
Alignment:
| Q |
17 |
gacacaaccatggttccaattaagagcaatccacataatcaagtacaacagtacaagcaactaatcatgaactcttccaattttacaaatcaacaactat |
116 |
Q |
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| T |
38604697 |
gacacaaccatggttccaattaagagcaatccacataatcaagtacaacagtacaagcaactaatcatgaactcttccaattttacaaatcaacaattat |
38604598 |
T |
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| Q |
117 |
gtaacagaaaaaactagctgagctcaaagtagtactaaaaaacaagctttt-caatnnnnnnnncgtaaaaattgatgaaaacgtgaagtgttgaactga |
215 |
Q |
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| T |
38604597 |
gtaacagaaaaaactagctgagctcaaagtagtactaaaaaacaagcttttccaaaaaaaaaaacgtaaaaatttatgaaaacgggaagtgttgaactga |
38604498 |
T |
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| Q |
216 |
gagaggtgtacgtcagagaggtggggttggaaagaaagtagatcggcggcaagtgtggcacgcaaatggacaagaggttctgtggatggaaacggcgtta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38604497 |
gagaggtgtacgtcagagaggtggggttggaaagaaagtagatcggcggcaagtgtggcacgcaaatggacaagaggttctgtggatggaaacggcgtta |
38604398 |
T |
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| Q |
316 |
ttgt |
319 |
Q |
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|||| |
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| T |
38604397 |
ttgt |
38604394 |
T |
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