View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21456_high_13 (Length: 317)
Name: NF21456_high_13
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_13 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 317
Target Start/End: Original strand, 46039041 - 46039323
Alignment:
| Q |
33 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcatataactaatctcaagaagaattgnnnnnnnnta |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |
|
|
| T |
46039041 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcata-acttaatctcaagaagaattgaaaaaaa-tc |
46039138 |
T |
|
| Q |
133 |
aaattaagattctatcattaattaaagcgacattaatgactattttactagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
232 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46039139 |
aaattcagattctatcgttaattaaagcgacattaatgactattttaccagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
46039238 |
T |
|
| Q |
233 |
taccactaaactgacacctcattgatagactaaaacatctatattggggcatcattagcttctgctagatcactgtattgtctct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46039239 |
taccactaaactgacacctcattgatagactacaacatctatattggggcatcattagcttctgctagatcactgtattgtctct |
46039323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46038987 - 46039019
Alignment:
| Q |
1 |
atatccattgaaatcaagatacaatcatctata |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46038987 |
atatccattgaaatcaagatacaatcatctata |
46039019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University