View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_15 (Length: 307)
Name: NF21456_high_15
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 10162568 - 10162833
Alignment:
| Q |
13 |
agaacctgtgttttgataacacaagtgttaaagattggtttggttgtgaaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatg |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10162568 |
agaaactgtgttttgataacacaagtgttaaagattggtttggttgtgaaggactgggctaaaagacataaattggttactgcttcaaatattgagaatg |
10162667 |
T |
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| Q |
113 |
ttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162668 |
ttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagt |
10162767 |
T |
|
| Q |
213 |
ctctcgtatggaaatggattctttcatcgctcatattactagatagttgttgtggtaatgatgatc |
278 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
10162768 |
ctctcgtattgaaatggattcttttatcgctcatattactagatagttgttgtgtaaatgatgatc |
10162833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 10163561 - 10163672
Alignment:
| Q |
155 |
gagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactag |
254 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10163561 |
gagagagagagataaaacttaaaaatgttgttagtacgtcaatggatgaaggaggagtttctcgtatggaaatggattctttcattgctcatattactag |
10163660 |
T |
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| Q |
255 |
atagttgttgtg |
266 |
Q |
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||| ||| |||| |
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| T |
10163661 |
atatttgctgtg |
10163672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 10163482 - 10163559
Alignment:
| Q |
38 |
tgttaaagattggtttggttgtgaaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatgttg |
115 |
Q |
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|||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
10163482 |
tgttaaagattggtttggttgtcgaggattgggctaatagacatgaattggttactgcttcagatattgagaatgttg |
10163559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 1609566 - 1609814
Alignment:
| Q |
13 |
agaacctgtgttttgataacacaagtgttaaagattggtttggttgtgaaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatg |
112 |
Q |
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|
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
1609566 |
agaaactgtgttttcataacacaagtgttaaagattggtttggttgtgatggattgggctaaaagacatgagttggttactgcttcagatattgagaatg |
1609665 |
T |
|
| Q |
113 |
ttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagt |
212 |
Q |
| |
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||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||| ||||||||||| ||||| |
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| T |
1609666 |
ttgttagaacgttgatggatacaatggaaggtgatgagatgcgagagagagcaatgaaacttaaaaatgctattggtatgtcgatggatgaaggcggagt |
1609765 |
T |
|
| Q |
213 |
ctctcgtatggaaatggattctttcatcgctcatattactagatagttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1609766 |
ttctcgtatggaaatggattctttcatcgctcatatcactagatagttg |
1609814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 37722203 - 37722269
Alignment:
| Q |
192 |
gtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatag |
258 |
Q |
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|||||||||||||||||| || || ||||||||| ||||||||||||| || ||| | ||||||||| |
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| T |
37722203 |
gtcaatggatgaaggtggtgtttcacgtatggaactggattctttcattgcccatgtgactagatag |
37722269 |
T |
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