View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_3 (Length: 382)
Name: NF21456_high_3
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 39540208 - 39540303
Alignment:
| Q |
287 |
tacttgttttcaacgttttaccctttgtcagcctattcgtgttttttcaagaaataatgttttgtgacattaagcattttccaaaatatatcctaa |
382 |
Q |
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| T |
39540208 |
tacttgttttcaacgttttaccctttgtcagcctattcgtgttttttcaagaaataatgttttgcgacattaagcattttccaaaatatatcctaa |
39540303 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 437718 - 437632
Alignment:
| Q |
80 |
caatgcaatttagtaggaaggaaaatacatatcatccttaaaccgaatcaaactcagagactcggcgcgctccgactcggcacaaac |
166 |
Q |
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| T |
437718 |
caatgcaatttaggaggaaggaaaatagatctcatccttgaaccgagtgaaactcggagactcagcacgttccgactcgacacaaac |
437632 |
T |
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