View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_4 (Length: 379)
Name: NF21456_high_4
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 379
Target Start/End: Complemental strand, 37801595 - 37801245
Alignment:
| Q |
29 |
ctaactaccatcactgtaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaatt |
128 |
Q |
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| T |
37801595 |
ctaactaccatcactgcaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaatt |
37801496 |
T |
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| Q |
129 |
cttctaactactacataggaatatggtacaaaaaggtctttccgcagacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgc |
228 |
Q |
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| T |
37801495 |
cttctaactactacataggaatatggtacaaaaatgtctttccacaaacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgc |
37801396 |
T |
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| Q |
229 |
taccttaaaaatttcagcgggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctacgttaggttctgttgta |
328 |
Q |
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| T |
37801395 |
taccttaaaaatttcagctggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctaagtcagattctgttgta |
37801296 |
T |
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| Q |
329 |
gctttcctcttagataccggcaatctcgttttaagaactaggcctaatgat |
379 |
Q |
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| T |
37801295 |
gctatgcttctagatactggaaatcttgttttaagacataggcctgatgat |
37801245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 32 - 379
Target Start/End: Original strand, 37764163 - 37764507
Alignment:
| Q |
32 |
actaccatcactgtaaatcaatctctctcaggtgatcaaactctagtctctgaaggaagaagaatctttgaattgggtttctttaaaccaggtaattctt |
131 |
Q |
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| T |
37764163 |
actaccatctcagcaaaacaatctctatctggtgaccaaactcttatttctgaaggaggaa---tctttgaactaggtttcttcaaaccaggtaattcct |
37764259 |
T |
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| Q |
132 |
ctaactactacataggaatatggtacaaaaaggtctttccgcagacaattgtttgggtagccaacagagacaaccctgtctctaataaaaacactgctac |
231 |
Q |
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| T |
37764260 |
ctaactactacataggaatatggtacaaaaaggtcattcaacaaacaattgtttgggtagccaacagagacaatcctgtctctgacaaaaacaccgccac |
37764359 |
T |
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| Q |
232 |
cttaaaaatttcagcgggtaatttagttctattgaatgagtcttcaaaacaagtttggtcaacaaacatgagttttcctacgttaggttctgttgtagct |
331 |
Q |
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||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||| || || |||||||||||| |
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| T |
37764360 |
cttaaaaatctcagatggtaatttagttatattaaatgagtcttcaaaacaagtttggtcaacaaacatgaatgttcctaagtcagattctgttgtagcc |
37764459 |
T |
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| Q |
332 |
ttcctcttagataccggcaatctcgttttaagaactaggcctaatgat |
379 |
Q |
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| T |
37764460 |
atgcttctagatactggaaatcttgttttgaaaaataggcctaatgat |
37764507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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