View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21456_high_8 (Length: 348)
Name: NF21456_high_8
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 62 - 318
Target Start/End: Original strand, 40513245 - 40513501
Alignment:
| Q |
62 |
tagggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagt |
161 |
Q |
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| T |
40513245 |
tagggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagt |
40513344 |
T |
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| Q |
162 |
ctaaccaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513345 |
ctaaccaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagc |
40513444 |
T |
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| Q |
262 |
tgtacgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaac |
318 |
Q |
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| T |
40513445 |
tgtacgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaac |
40513501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 40482571 - 40482768
Alignment:
| Q |
62 |
tagggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagt |
161 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40482571 |
tagggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagt |
40482670 |
T |
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| Q |
162 |
ctaaccaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
259 |
Q |
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| T |
40482671 |
ctaaccaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
40482768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 21611865 - 21611803
Alignment:
| Q |
214 |
aacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgtacgaaacttcat |
276 |
Q |
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||||||||||||||| ||||||||| | |||||||| |||||||| || ||| ||||| |||| |
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| T |
21611865 |
aacaagttctcctctcccaaaaaccctagaagaaggtgcaacatatgccgtatgaaacctcat |
21611803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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