View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21456_high_9 (Length: 342)
Name: NF21456_high_9
Description: NF21456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21456_high_9 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 25 - 342
Target Start/End: Original strand, 33814557 - 33814874
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33814557 |
catcaaaaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
33814656 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33814657 |
gttacaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
33814756 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814757 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
33814856 |
T |
|
| Q |
325 |
aaatattctcaccagtgg |
342 |
Q |
| |
|
||||||||||||| |||| |
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| T |
33814857 |
aaatattctcaccggtgg |
33814874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 33809826 - 33809942
Alignment:
| Q |
213 |
aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg |
310 |
Q |
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|||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || |||||||||||| |
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| T |
33809826 |
aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg |
33809924 |
T |
|
| Q |
311 |
cattgattttgaagaaat |
328 |
Q |
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||||||||||||| |||| |
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| T |
33809925 |
cattgattttgaaaaaat |
33809942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 342
Target Start/End: Original strand, 657 - 974
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
657 |
catcaagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
756 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
757 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
856 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
857 |
gtgttcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
956 |
T |
|
| Q |
325 |
aaatattctcaccagtgg |
342 |
Q |
| |
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||||||||||||| |||| |
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| T |
957 |
aaatattctcaccggtgg |
974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 9754594 - 9754284
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
9754594 |
catcaagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
9754495 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
9754494 |
gttgtaatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgg |
9754395 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9754394 |
gtgttcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
9754295 |
T |
|
| Q |
325 |
aaatattctca |
335 |
Q |
| |
|
||||||||||| |
|
|
| T |
9754294 |
aaatattctca |
9754284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 54969490 - 54969173
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
54969490 |
catcaagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
54969391 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
54969390 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgg |
54969291 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
54969290 |
gtgtttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaag |
54969191 |
T |
|
| Q |
325 |
aaatattctcaccagtgg |
342 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
54969190 |
aaatattctcaccggtgg |
54969173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 55 - 341
Target Start/End: Complemental strand, 4284273 - 4283990
Alignment:
| Q |
55 |
taaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaatccatggaagaagagatgaaatc |
154 |
Q |
| |
|
||||||| ||| | ||| ||||||| |||||| |||||||||| ||||||| |||||||||| |||||||| |||||| ||| ||||||| ||| ||| |
|
|
| T |
4284273 |
taaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgcattcaagaagaaatgccatc |
4284174 |
T |
|
| Q |
155 |
cctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaac |
254 |
Q |
| |
|
|||||||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| |||| ||||||| |||||||| |
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|
| T |
4284173 |
cctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagctcatgtctgaatagaacaac |
4284074 |
T |
|
| Q |
255 |
ccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccagtg |
341 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4284073 |
tcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctcaccagtg |
4283990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 13563767 - 13563713
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacc |
79 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
13563767 |
catcaagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacc |
13563713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 145 - 342
Target Start/End: Complemental strand, 4837704 - 4837507
Alignment:
| Q |
145 |
agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
4837704 |
agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga |
4837605 |
T |
|
| Q |
245 |
agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccagtgg |
342 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4837604 |
agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtgg |
4837507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 4837794 - 4837703
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaaccccaaagcttcatggaagctatagagataaccaataag |
116 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
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|
| T |
4837794 |
catcaaaaagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag |
4837703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 1130219 - 1130092
Alignment:
| Q |
208 |
cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa |
307 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |||||||||| || |
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|
| T |
1130219 |
cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa |
1130120 |
T |
|
| Q |
308 |
aggcattgattttgaagaaatattctca |
335 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
1130119 |
aggcaatgattttgaagaaatattctca |
1130092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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