View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_high_14 (Length: 283)
Name: NF21457_high_14
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 48606853 - 48606598
Alignment:
| Q |
19 |
atttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgtttttcaaggtttaagttatcgtcgttcacgttatctt |
118 |
Q |
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| T |
48606853 |
atttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgtttttcaaggtttaagttatcgtcgttcacgttatctt |
48606754 |
T |
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| Q |
119 |
tttcatgattctcctagtttttatgtttcacttcaagaaaataatgctattagtttagatcaaaaccaacccaacaaaacccatgtttctgttgatgtta |
218 |
Q |
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| T |
48606753 |
tttcatgattctcctagtttttatgtttcacttcaagaaaataatgctattagtttagatcaaaaccaacccaacaaaacccatgtttctgttgatgtta |
48606654 |
T |
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| Q |
219 |
ctttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
274 |
Q |
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| T |
48606653 |
ctttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
48606598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 48612450 - 48612188
Alignment:
| Q |
21 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgtttttcaaggtttaagttatcgtcgttcacgttatctttt |
120 |
Q |
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| T |
48612450 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttaagaatgtttttcaaggtttaaggtatcgtcgttcacattatcttgc |
48612351 |
T |
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| Q |
121 |
tcatgattctc---ctagtttttatgtttcacttcaagaaaataatgctattagttt---agatcaaaaccaacccaacaaaacccatgt---ttctgtt |
211 |
Q |
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| T |
48612350 |
tcatgtttctcctactacttttaatctttcacatcaagatttgtttcctgttagtttagaagatcaaaaccaacccaacaatacccatgtttcttctgtt |
48612251 |
T |
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| Q |
212 |
gatgttactttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
274 |
Q |
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| T |
48612250 |
aatgttactttagctcaaaaacttgataaaaacctagaaagttttgatcttgttaagaataat |
48612188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7447240 - 7447176
Alignment:
| Q |
21 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
85 |
Q |
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| T |
7447240 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaatgttttt |
7447176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7959304 - 7959240
Alignment:
| Q |
21 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
85 |
Q |
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| T |
7959304 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
7959240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 20987069 - 20987005
Alignment:
| Q |
21 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
85 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||| |
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| T |
20987069 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactcttgagaatgttttt |
20987005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 3802313 - 3802377
Alignment:
| Q |
21 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
85 |
Q |
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|||||||| |||||||||||||||| ||||| ||| |||||||||||| || | ||||| ||||| |
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| T |
3802313 |
ttttggttttatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
3802377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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