View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_high_15 (Length: 271)
Name: NF21457_high_15
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 8947473 - 8947225
Alignment:
| Q |
5 |
tgtccaagaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttc |
104 |
Q |
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| T |
8947473 |
tgtcccagaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttc |
8947374 |
T |
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| Q |
105 |
gtctactacttcaaagcctaaaccatgcaaccaagtacaatgagaaattaatcagacataaggaaaaacaccaatcaaagtagtttttgaatgtaatgtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947373 |
gtctactacttcaaagcctaaaccatgcaaccaagtacaatgagaaattaatcagacataaggaaaaacaccaatcaaagtagtttttgaatgtaatgtc |
8947274 |
T |
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| Q |
205 |
aactaatttcttatactttgtggtgaatatcatgtattattggcatcta |
253 |
Q |
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| T |
8947273 |
aactaatttcttatactttgtggtgaatatcatgtattattggcatcta |
8947225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 8940545 - 8940400
Alignment:
| Q |
5 |
tgtccaagaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttc |
104 |
Q |
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||||| |||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| | |||| || | |||||||||||||||||||| |
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| T |
8940545 |
tgtcccagaatatatagcttgaagggtttgaacatatgtttgagctgtaatggttgcacaatatgcttacttctatgtttcctgttccacaacatccttt |
8940446 |
T |
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| Q |
105 |
gtctactacttcaaagcctaaaccatgcaaccaagtacaatgagaaat |
152 |
Q |
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| T |
8940445 |
atctgctacttcaaaacct-aaccatgc-accaaatacaatgagaaat |
8940400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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