View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_high_6 (Length: 411)
Name: NF21457_high_6
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_high_6 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 19179 - 19562
Alignment:
| Q |
18 |
tcataaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggcgataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19179 |
tcataaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggcgataa |
19278 |
T |
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| Q |
118 |
attctttctttccttgacgcgaattctttgagactctcttcacagctatctctttattgatttttccaaggattcccttataaacagttccaaatccacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19279 |
attctttctttccttgacgcgaattctttgagactctcttcacagctatctctttattgatttttccaaggattcccttataaacggttccaaatccacc |
19378 |
T |
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| Q |
218 |
ctcaccaagcttgttctgatggctgaatccaccagttgcattcatcaattcctttagtcgatatttctttggagccatagatgagtgttgaatttgatct |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19379 |
ctcaccaagcttgttctgatggctgaatccacctgttgcattcatcaattcctttagtcgatatttctttggagccatagatgagtgttgaatttgatcc |
19478 |
T |
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| Q |
318 |
tcaatccttggatatgtatcttcttgaaactccattcttattttgaatttcggataaaccaagaaaagtaacaacacacctatg |
401 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
19479 |
tcaatccttggatatgtatcttcttgaacctccattcttctttggaatttccgataaaccaagaaaagtaacaacacacctatg |
19562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 37244 - 36861
Alignment:
| Q |
18 |
tcataaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggcgataa |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37244 |
tcataaacaaggagaagctctttattttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggctataa |
37145 |
T |
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| Q |
118 |
attctttctttccttgacgcgaattctttgagactctcttcacagctatctctttattgatttttccaaggattcccttataaacagttccaaatccacc |
217 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
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| T |
37144 |
attctttctttccttgacgtgaattcttcgagactctcttcacagctatctctttattgttttttccaaggaatcccttataaacagttccaaatccccc |
37045 |
T |
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| Q |
218 |
ctcaccaagcttgttctgatggctgaatccaccagttgcattcatcaattcctttagtcgatatttctttggagccatagatgagtgttgaatttgatct |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||| |
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| T |
37044 |
ttcaccaagcttgttctgatggctgaatccacctgttgctttcatcaattcctttagtcgatatttctttggtgccattgacgagtactgaatttgatcc |
36945 |
T |
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| Q |
318 |
tcaatccttggatatgtatcttcttgaaactccattcttattttgaatttcggataaaccaagaaaagtaacaacacacctatg |
401 |
Q |
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|| ||||||||||||||||||||||||| |||||| ||| |||| | ||| |||| |||||||||| || ||||||||||||| |
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| T |
36944 |
tctatccttggatatgtatcttcttgaatctccatgcttcttttcacgttccgatataccaagaaaaataccaacacacctatg |
36861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 11554 - 11233
Alignment:
| Q |
21 |
taaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggcgataaatt |
120 |
Q |
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||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | |
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| T |
11554 |
taaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattgttgtaacttctgctataaact |
11455 |
T |
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| Q |
121 |
ctttctttccttgacgcgaattctttgagactctcttcacagctatctctttattgatttttccaaggattcccttataaacagttccaaatccaccctc |
220 |
Q |
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||| ||||||||| || |||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| | |
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| T |
11454 |
cttgctttccttgtcgagaatccttcgagactctcttcacagctatctctttattg---tttccaaggattcctttatagacagttccaaatccaccttg |
11358 |
T |
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| Q |
221 |
accaagcttgttctgatggctgaatccaccagttgcattcatcaattcctttagtcgatatttctttggagccatagatgagtgttgaatttgatcttca |
320 |
Q |
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|| || ||||||||||||||||||||| ||||| || | ||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |
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| T |
11357 |
gccgagtttgttctgatggctgaatccatttgttgctttgaccaattcctttaactgatatttctttggagccatagacgagtgttgaatttgatcctct |
11258 |
T |
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| Q |
321 |
atccttggatatgtatcttcttgaa |
345 |
Q |
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| T |
11257 |
atccttggatatgcatcttcttgaa |
11233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 47689598 - 47689565
Alignment:
| Q |
193 |
ccttataaacagttccaaatccaccctcaccaag |
226 |
Q |
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| T |
47689598 |
ccttataaacagttccaaaaccaccctcaccaag |
47689565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 47678149 - 47678113
Alignment:
| Q |
193 |
ccttataaacagttccaaatccaccctcaccaagctt |
229 |
Q |
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| T |
47678149 |
ccttataaacagttccaaatccaccttgaccaagctt |
47678113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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