View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_10 (Length: 341)
Name: NF21457_low_10
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 11111425 - 11111730
Alignment:
| Q |
10 |
attattctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11111425 |
attattctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaa |
11111524 |
T |
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| Q |
110 |
atgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtgg |
209 |
Q |
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| T |
11111525 |
atgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtgg |
11111624 |
T |
|
| Q |
210 |
cctctacagaatcaatggaaggagatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaa |
309 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
11111625 |
cctctgcagaatcaatggaaggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataaa |
11111720 |
T |
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| Q |
310 |
gagaagtgct |
319 |
Q |
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|||||||||| |
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| T |
11111721 |
gagaagtgct |
11111730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 11119200 - 11119506
Alignment:
| Q |
14 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgg |
113 |
Q |
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| T |
11119200 |
ttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgg |
11119299 |
T |
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| Q |
114 |
gtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctc |
213 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||| ||| |
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| T |
11119300 |
gtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacct- |
11119398 |
T |
|
| Q |
214 |
tacagaatcaatggaaggagatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaga |
313 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11119399 |
--cagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaa |
11119496 |
T |
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| Q |
314 |
agtgctagct |
323 |
Q |
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| T |
11119497 |
agtgctagct |
11119506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 10793351 - 10793121
Alignment:
| Q |
28 |
tgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgggtaatattgatgtg |
127 |
Q |
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||||||||||| ||||||||| || | |||||| |||| ||||| || ||||||| | | ||||| || |||||||||||||||||||||||| |||| |
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| T |
10793351 |
tgcagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtg |
10793252 |
T |
|
| Q |
128 |
cttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctacagaatcaatgg |
227 |
Q |
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||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||| || ||||||| | | ||| ||| ||||||||| | | |
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| T |
10793251 |
cttaccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttg |
10793152 |
T |
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| Q |
228 |
aaggagatatggttagttcaatctaaatgaa |
258 |
Q |
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| || ||||||||||||||||| |||||||| |
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| T |
10793151 |
atggggatatggttagttcaatttaaatgaa |
10793121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 11137826 - 11137899
Alignment:
| Q |
101 |
atgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaa |
174 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| || |||||||| ||||||||||| ||||||||| |||| |
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| T |
11137826 |
atgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 11156766 - 11156842
Alignment:
| Q |
99 |
caatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaac |
175 |
Q |
| |
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|||||||||||||||| ||||||| |||||| || || | ||||||||| ||||||||||||||||| ||| ||||| |
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| T |
11156766 |
caatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 11146044 - 11146204
Alignment:
| Q |
14 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgg |
113 |
Q |
| |
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||||||||| | ||||| |||||||||||||||||||||| |||||| | | ||||| | ||| ||| | | ||||| | | ||||||||||||| |
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| T |
11146044 |
ttctcaacatctggtgctgataccattagcattgtcaacaactttgccactgatcaaaaagctttttttgagagctttaaggctgctatgattaaaatgg |
11146143 |
T |
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| Q |
114 |
gtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaa |
174 |
Q |
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| ||||||| |||| | ||||| || ||||||| ||||||||||||||||| ||| |||| |
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| T |
11146144 |
gaaatattggtgtgttaaccgggaaccaaggagagattagaaaacaatgcaactttgttaa |
11146204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 11156681 - 11156720
Alignment:
| Q |
14 |
ttctcaacaccgggtgcagataccattagcattgtcaaca |
53 |
Q |
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||||||||| | |||||||||||||||||||||||||||| |
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| T |
11156681 |
ttctcaacatccggtgcagataccattagcattgtcaaca |
11156720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 11150013 - 11150061
Alignment:
| Q |
14 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaa |
62 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||||||| ||||||| |
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| T |
11150013 |
ttctcaacatctggttcagataccattagcattgtcaacaaatttgcaa |
11150061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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