View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21457_low_11 (Length: 329)

Name: NF21457_low_11
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21457_low_11
NF21457_low_11
[»] chr7 (5 HSPs)
chr7 (20-329)||(42537609-42537929)
chr7 (129-246)||(45291895-45292012)
chr7 (129-246)||(45296020-45296137)
chr7 (129-206)||(41739624-41739701)
chr7 (129-245)||(38516622-38516738)
[»] chr3 (4 HSPs)
chr3 (129-315)||(37464850-37465047)
chr3 (129-250)||(37463681-37463802)
chr3 (129-206)||(9099562-9099639)
chr3 (124-206)||(19801783-19801865)
[»] chr2 (6 HSPs)
chr2 (129-250)||(40894809-40894930)
chr2 (129-250)||(31620527-31620648)
chr2 (181-250)||(36666256-36666325)
chr2 (129-250)||(35298558-35298679)
chr2 (129-231)||(31622062-31622164)
chr2 (259-305)||(40894743-40894789)
[»] chr1 (5 HSPs)
chr1 (129-250)||(36575475-36575596)
chr1 (129-250)||(26531028-26531149)
chr1 (129-253)||(35062566-35062690)
chr1 (129-206)||(35063604-35063681)
chr1 (129-216)||(26529510-26529597)
[»] chr6 (2 HSPs)
chr6 (129-246)||(9448708-9448825)
chr6 (129-250)||(226123-226244)
[»] chr4 (4 HSPs)
chr4 (129-206)||(30829929-30830006)
chr4 (130-250)||(8480886-8481006)
chr4 (129-250)||(31410549-31410669)
chr4 (129-206)||(52190351-52190428)
[»] chr5 (4 HSPs)
chr5 (129-206)||(38921457-38921534)
chr5 (129-231)||(16727814-16727916)
chr5 (129-206)||(35968678-35968755)
chr5 (162-250)||(35967383-35967471)
[»] scaffold0115 (2 HSPs)
scaffold0115 (184-253)||(4393-4462)
scaffold0115 (184-253)||(12133-12202)
[»] chr8 (3 HSPs)
chr8 (129-250)||(3872224-3872345)
chr8 (129-206)||(17863468-17863545)
chr8 (141-206)||(37241042-37241107)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 42537609 - 42537929
Alignment:
Q  20 ttgtaaacatggtttgtagtagattgcttcccaaggacggattccttaaacatggctcaactactttttatgtgatgttggattactttatgtttctatt 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42537609 ttgtaaacatggtttgtagtagattgcttcccaaggacgaattccttaaacatggctcaactactttttatgtgatgttggattactttatgtttctatt 42537708  T
Q  120 attgattgggtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctc 219  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||||||    
T  42537709 attgattgggtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctc 42537808  T
Q  220 ttccgtttgtcattcacgtccaa-----------aacgttaattgtgttgatctggctgctaaacttgccacttcagctgctgtattggcattccacaca 308  Q
    |||||||||||||||||||||||           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42537809 ttccgtttgtcattcacgtccaaaacgttaattgaacgttaattgtgttgatctggctgctagacttgccacttcagctgctgtattggcattccacaca 42537908  T
Q  309 tgcaaaggacgaatccactgc 329  Q
    |||||||||||||||||||||    
T  42537909 tgcaaaggacgaatccactgc 42537929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 45292012 - 45291895
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||||| |||||||||||  |||| ||||||| |||||| |||||||| ||| ||||||||||||| ||| || |||||||||||| |    
T  45292012 gtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgttag 45291913  T
Q  229 tcattcacgtccaaaacg 246  Q
    |||||||| |||||||||    
T  45291912 tcattcacatccaaaacg 45291895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 45296137 - 45296020
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||||| ||| |||||||  |||| ||||||| |||||| || ||||| ||| ||||||||||||| ||| || |||||||||||| |    
T  45296137 gtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgttag 45296038  T
Q  229 tcattcacgtccaaaacg 246  Q
    |||||||| |||||||||    
T  45296037 tcattcacatccaaaacg 45296020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 41739624 - 41739701
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||| |||||| |  |||||||||||||||||||||||    
T  41739624 gtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaact 41739701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 38516622 - 38516738
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||||| |||||||||||   ||| ||||||  |||||| || ||||| ||| | ||||||||||| ||| || || ||| ||||| |    
T  38516622 gtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaaagtttctcccgttag 38516721  T
Q  229 tcattcacgtccaaaac 245  Q
    |||||||| ||||||||    
T  38516722 tcattcacatccaaaac 38516738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 129 - 315
Target Start/End: Complemental strand, 37465047 - 37464850
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||| | |||||| ||||||||||||||||| |||||||||||||| |  ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  37465047 gtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtttg 37464948  T
Q  229 tcattcacgtccaaaacg-----------ttaattgtgttgatctggctgctaaacttgccacttcagctgctgtattggcattccacacatgcaaag 315  Q
    ||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  37464947 tcattcacgtccaaaacgttaactgaacgttaattgtgttgatctggctgctagacttgccacttcagttgctgtattggcattccacacatgcaaag 37464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 37463681 - 37463802
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||  ||||||||||||||||||| |||| ||||| | || ||| || ||||||||||||| |||||||||     |||||||||||| || |    
T  37463681 gtaaaccctcgcttgggttcctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccattag 37463780  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    ||||| ||||||||||||||||    
T  37463781 tcatttacgtccaaaacgttaa 37463802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 9099562 - 9099639
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||| ||| |||||||  |||| ||||| | |||||| ||||||||||||||||||||||||||    
T  9099562 gtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaact 9099639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 19801783 - 19801865
Alignment:
Q  124 attgggtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    |||| ||||||||||| |  ||| |||||||||||  |||| |||||| ||| |||||  |||||| ||||||||||||||||    
T  19801783 attgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaact 19801865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 40894930 - 40894809
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||| | ||| |||||||  |||| |||||||||| ||| || ||||||||||||||| ||||||| ||  ||||||| ||||||| |    
T  40894930 gtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttag 40894831  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    ||||||||||||||||||||||    
T  40894830 tcattcacgtccaaaacgttaa 40894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 31620527 - 31620648
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| ||| || |||||||||||  |||| |||||| ||| ||||||||||||  ||||||||||||||||  || ||||||| ||||||| |    
T  31620527 gtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgttag 31620626  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||| || ||||||||||||||    
T  31620627 tcatacaagtccaaaacgttaa 31620648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 36666256 - 36666325
Alignment:
Q  181 tgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttgtcattcacgtccaaaacgttaa 250  Q
    ||||||||  |||||||| ||||||||||| ||||||| ||||||| ||||| ||||| |||||||||||    
T  36666256 tgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcatacacgttcaaaacgttaa 36666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 35298558 - 35298679
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| ||||||||||||||||||  |||| |||||   || ||| ||||||||  ||||| |  ||||||| ||  || ||||||| |||| |    
T  35298558 gtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtctctttcgttag 35298657  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||||| | |||||||||||||    
T  35298658 tcattcccatccaaaacgttaa 35298679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 31622164 - 31622062
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||| | |||||| |||||||||||  ||||||||||   || ||| ||||||||  |||| ||| ||||||| ||| ||||| | |||||||||    
T  31622164 gtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtttg 31622065  T
Q  229 tca 231  Q
    |||    
T  31622064 tca 31622062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 40894789 - 40894743
Alignment:
Q  259 atctggctgctaaacttgccacttcagctgctgtattggcattccac 305  Q
    ||||||| |||| |||||||||||||| |||||||||||| ||||||    
T  40894789 atctggccgctagacttgccacttcagttgctgtattggccttccac 40894743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 36575596 - 36575475
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| ||| || |||||||||||  |||| ||||||  || ||||| ||||||  |||||||||||||||||||| ||||||| ||||||| |    
T  36575596 gtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgttag 36575497  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||| || ||||||||||||||    
T  36575496 tcatacaagtccaaaacgttaa 36575475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 26531149 - 26531028
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| || ||| |||||||||||  |||| ||| ||  || ||| ||||||||  |||||||||||||||| ||| ||||||||||| | | |    
T  26531149 gtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgctag 26531050  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||| |||||||||||||||||    
T  26531049 tcatacacgtccaaaacgttaa 26531028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 35062566 - 35062690
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||| ||| |||||||||| |||||    ||||||||||   |||||| ||||||||| |||| ||||||||||| ||  ||||| | ||||||| |    
T  35062566 gtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttag 35062665  T
Q  229 tcattcacgtccaaaacgttaattg 253  Q
    |||| |||||||||||| |||||||    
T  35062666 tcatccacgtccaaaacattaattg 35062690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 35063681 - 35063604
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| ||||||  |||||||||||||||  ||||||| |||||  |  |||||||||||||||||||||||    
T  35063681 gtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaact 35063604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 26529510 - 26529597
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgt 216  Q
    ||||||||||| |||||| |||||||||||  |||| ||||||  || ||| ||||||||  |||||||| ||||||| ||| |||||    
T  26529510 gtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgt 26529597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 9448825 - 9448708
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||||| |||||||||||  |||| ||||||  |||||| || ||||| ||| ||||||||||||| ||| || ||||||||| || |    
T  9448825 gtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttcctttag 9448726  T
Q  229 tcattcacgtccaaaacg 246  Q
    |||||||| |||||||||    
T  9448725 tcattcacatccaaaacg 9448708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 226123 - 226244
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| |||||| | |||||||||  |||| ||||||| |||||| || | ||| |||||| |  ||||||| ||| || |||||||| |||      
T  226123 gtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacatccatggaacaaggaaacgcaaaaaaaactccctgaaagtctcttctgttaa 226222  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||||| ||| || ||||||||    
T  226223 tcattcccgttcagaacgttaa 226244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 30829929 - 30830006
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||| |||||| |  |||||||||||||||||||||||    
T  30829929 gtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaact 30830006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 8481006 - 8480886
Alignment:
Q  130 taaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttgt 229  Q
    ||||| |||| ||| || |||||||||||  |||| ||||||  || ||| || |||||||||||| |||||||||| ||  || |||||||||||| ||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  230 cattcacgtccaaaacgttaa 250  Q
    ||||| | |||||||||||||    
T  8480906 cattcccatccaaaacgttaa 8480886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 31410669 - 31410549
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||| | || ||||||||||||||   |||| ||||||  || | | ||||||||| ||||||| |||||||| ||| ||| ||| ||||||| |    
T  31410669 gtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaact-cctcaatatctgttccgttag 31410571  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    |||  |||||||||||||||||    
T  31410570 tcacacacgtccaaaacgttaa 31410549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 52190428 - 52190351
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||| ||||||||||   |||| ||||||  | |||| || |||||| ||||||||||||||||    
T  52190428 gtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaact 52190351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 38921457 - 38921534
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||| ||||||||||||||||  ||||||| |||||| |  |||||||||| ||||||||||||    
T  38921457 gtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaact 38921534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 16727814 - 16727916
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||| ||||||  ||||||||||  |||| ||||||  || | | ||||||||  |||||||| ||||||||||| ||||||| ||||||| |    
T  16727814 gtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttag 16727913  T
Q  229 tca 231  Q
    |||    
T  16727914 tca 16727916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 35968755 - 35968678
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||| | |||| | ||||||||||||| ||| ||||||| |||| | |  |||||||||||||||||||||||    
T  35968755 gtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaact 35968678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 35967383 - 35967471
Alignment:
Q  162 tcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttgtcattcacgtccaaaacgttaa 250  Q
    ||||||||||  ||||||| |||||||| |||| ||||||||||| ||  ||||| | ||||||| ||||  |||||||||||| ||||    
T  35967383 tcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcaaccacgtccaaaacattaa 35967471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 4393 - 4462
Alignment:
Q  184 atcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttgtcattcacgtccaaaacgttaattg 253  Q
    |||||||||||| |||||||||| ||  || ||||||||| || ||||||| | ||||||||||||||||    
T  4393 atcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaattg 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 12133 - 12202
Alignment:
Q  184 atcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttgtcattcacgtccaaaacgttaattg 253  Q
    |||||||||||| |||||||||| ||  || ||||||||| || ||||||| | ||||||||||||||||    
T  12133 atcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaattg 12202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 3872345 - 3872224
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaacttcctaaatgtctcttccgtttg 228  Q
    ||||||||||  |||||| ||||||||||   |||| ||||||  || ||| || |||||| ||||||||||||||||  || ||||  | ||||||| |    
T  3872345 gtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgttag 3872246  T
Q  229 tcattcacgtccaaaacgttaa 250  Q
    ||| |  |||||||||||||||    
T  3872245 tcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 17863468 - 17863545
Alignment:
Q  129 gtaaaccctcagttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||| |||||| ||||||||||   |||| ||||||  ||||||||| |||||| |||  |||||||||||    
T  17863468 gtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaact 17863545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 37241042 - 37241107
Alignment:
Q  141 ttgggttcctgaaagtgttgctcgttatcaggtacatccttgaatcaatgaaacgaaccaaaaact 206  Q
    ||||||||||||||||||  |||| ||||||  || | |||| |||||||||||| ||||||||||    
T  37241042 ttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaact 37241107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University