View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_13 (Length: 315)
Name: NF21457_low_13
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11104507 - 11104211
Alignment:
| Q |
1 |
tttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaagagttatgttggcagttaagctatcccttcttcccaatggaattggccat |
100 |
Q |
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| T |
11104507 |
tttaagttgatccaatgtggagaagggtccgggaaggttttgatttgcaagagttatgttggcggttaagctatcccttcttcccaatggaattggccat |
11104408 |
T |
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| Q |
101 |
gagggacctcctccctgttcatagatcaatatatattagatgattttaagatggatatttgagaagcaaatattactagtgaccatataaagtttatgaa |
200 |
Q |
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| T |
11104407 |
gagggacctcctccctgttcatagatcaatatatattagatgattttaagatggatatttgagaagcaaaaattactagtgaccatataaagtttatgaa |
11104308 |
T |
|
| Q |
201 |
attaaaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
297 |
Q |
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| T |
11104307 |
attaaaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
11104211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 11097484 - 11097351
Alignment:
| Q |
1 |
tttaagttgatccaatgtggagaagggtccaggaaggttttgatttgcaagagttatgttggcagttaagctatcccttcttcccaatggaattggccat |
100 |
Q |
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||||||||||||||||||| | |||||| | |||||||||||||||||||| | | ||| || ||||| |||||||||||||||||||||||| ||||| |
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| T |
11097484 |
tttaagttgatccaatgtgaaaaagggtgctggaaggttttgatttgcaagggcttggtttgctgttaaactatcccttcttcccaatggaatttgccat |
11097385 |
T |
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| Q |
101 |
gagggacctcctccctgttcatagatcaatatat |
134 |
Q |
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| T |
11097384 |
gagggacctcctccctgttcataaaccaatatat |
11097351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 11095844 - 11095752
Alignment:
| Q |
205 |
aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtctt |
297 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
11095844 |
aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtctt |
11095752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 11171372 - 11171303
Alignment:
| Q |
207 |
aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
276 |
Q |
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| T |
11171372 |
aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggaca |
11171303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 11177375 - 11177309
Alignment:
| Q |
210 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
276 |
Q |
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|||||||| |||||||| |||||| | || | ||||||||||||||||||||||||||||||||| |
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| T |
11177375 |
ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggaca |
11177309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 11155760 - 11155695
Alignment:
| Q |
211 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
276 |
Q |
| |
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|||||||| ||| ||| ||| ||| |||| || ||||||||||||||||||||| ||||||||||| |
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| T |
11155760 |
taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggaca |
11155695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 11145444 - 11145381
Alignment:
| Q |
210 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttagg |
273 |
Q |
| |
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||||||| |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| |
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| T |
11145444 |
ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagg |
11145381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 11118296 - 11118243
Alignment:
| Q |
211 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaac |
264 |
Q |
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|||||||| ||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
11118296 |
taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaac |
11118243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 11137111 - 11137079
Alignment:
| Q |
244 |
aagaatatcagcacaagaaacagtgttaggaca |
276 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
11137111 |
aagaatatcagcacaagaaactgtgttaggaca |
11137079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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