View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21457_low_16 (Length: 246)
Name: NF21457_low_16
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32602457 - 32602229
Alignment:
| Q |
1 |
cagcaaaaataaattatcatttcaagattgatataaattctgaaatccaatggttatagtatattttcacagaattgaatttggtgatgtaactgcgtga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32602457 |
cagcaaaaataaagtatcatttcaagattgatataaattctgaaatccaatggttatagtatattttcacagaattgaatttggtgatgtaactgcgtgg |
32602358 |
T |
|
| Q |
101 |
accaataaccgttctcaaccatccaatttgaatcaatgaccgagatcgattaactgtgttacaatatatttgcactagtttaggaatgaatattcctaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32602357 |
accaataaccgttctcaaccatccaatttgaatcaacgaccgagatcgattaactgtgttacaatatatttgcactag-ttaggaatgaatattcctaaa |
32602259 |
T |
|
| Q |
201 |
cttatttcgcacattgcgacaatcagattg |
230 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
32602258 |
cttatttcgcacactgcgacaatcagattg |
32602229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University