View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_18 (Length: 237)
Name: NF21457_low_18
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4141612 - 4141394
Alignment:
| Q |
1 |
aagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttcaagggtgtttgtacc |
100 |
Q |
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| T |
4141612 |
aagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacatagtcaaacaatttcaagggtgtttgtacc |
4141513 |
T |
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| Q |
101 |
acaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctttgagcaatttgg |
200 |
Q |
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| T |
4141512 |
gcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctttgagcaatttgg |
4141413 |
T |
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| Q |
201 |
ggaagggttttaacaactt |
219 |
Q |
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| T |
4141412 |
ggaagggttttaacaactt |
4141394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 3855066 - 3855228
Alignment:
| Q |
56 |
tgtaccggcgcgacatagtcaaacaatttcaagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaag |
155 |
Q |
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| T |
3855066 |
tgtactggcgcgacatagttaaacaatttcaagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaat |
3855165 |
T |
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| Q |
156 |
acgaaatagaagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaact |
218 |
Q |
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| T |
3855166 |
aagaaatagaagaagagtcagaaatgtgggatttgagcaaattggggaagggttctaataact |
3855228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 41541991 - 41541943
Alignment:
| Q |
164 |
gaagaagagtcggaaatgtgggctttgagcaatttggggaagggtttta |
212 |
Q |
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| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtttta |
41541943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41542100 - 41542054
Alignment:
| Q |
1 |
aagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
47 |
Q |
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| T |
41542100 |
aagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
41542054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1882231 - 1882185
Alignment:
| Q |
1 |
aagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
47 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||| |||| |
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| T |
1882231 |
aagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
1882185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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