View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_19 (Length: 218)
Name: NF21457_low_19
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25950010 - 25949814
Alignment:
| Q |
1 |
ccataatctacttaatcttcttctttggcctcaactgcaagacgagatatgataaacaacattacatttcagtaatgcatagttttaggcaacaattcgc |
100 |
Q |
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| T |
25950010 |
ccataatctacttaatcttcttctttggcctcaactgcaagacgagatatgataaacaacattacatttcagtaatgcatagttttaggcaacaattcgc |
25949911 |
T |
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| Q |
101 |
acactataaaaactaaaaatagagtggaaatcagtcacacctgattactgtgaccacacttctttttcctgcagttcacagcccttggatgcagacg |
197 |
Q |
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| T |
25949910 |
acactataaaaactaaaaatagagtggaaatcagtcacacctgattactgtgaccacacttctttttcctgcagttcacagcccttggatgcagacg |
25949814 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 42077474 - 42077442
Alignment:
| Q |
7 |
tctacttaatcttcttctttggcctcaactgca |
39 |
Q |
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| T |
42077474 |
tctacttgatcttcttctttggcctcaactgca |
42077442 |
T |
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