View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21457_low_2 (Length: 464)
Name: NF21457_low_2
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 227 - 447
Target Start/End: Complemental strand, 26836336 - 26836109
Alignment:
| Q |
227 |
gagagagagtataaatattttcttgtg--aggtatgtataagtcaacagtcaaggcttgggattcggacattaagtactggtttttcagagtttcctttg |
324 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26836336 |
gagagagagtataaatattttcctgtgtgaggtatgtatgagtcaacagtcaaggcttgggattcggacagtaagtactggtttttcagagtttcctttg |
26836237 |
T |
|
| Q |
325 |
ggaactttgttacagcata-----tatagctaggtctttctggagtaaagactagaaagtgaatctgccctgcaataatggaaaggaataagaaacatgt |
419 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836236 |
ggaactttgttacagcatactccatatagctaggtctttctggagtaaagactagaaagtgaatctgccctgcaataatggaaaggaataagaaacatgt |
26836137 |
T |
|
| Q |
420 |
gacataaatgtcactagaaagtgaatct |
447 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26836136 |
gacataaatgtcactagaaagtgaatct |
26836109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 26837359 - 26837297
Alignment:
| Q |
84 |
tattttctatgaagagcccttgctttgaaatactctttaacctcttgtaccaaaataatatat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
26837359 |
tattttctatgaagagcccttgctttgaaattctctttaacctctcgtaccaaaataatatat |
26837297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 26837939 - 26837904
Alignment:
| Q |
54 |
tattattatgattagcaataaaaatgcctatatttt |
89 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26837939 |
tattattatgattagcagtaaaaatgcctatatttt |
26837904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University