View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21457_low_3 (Length: 453)
Name: NF21457_low_3
Description: NF21457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21457_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 34332006 - 34331588
Alignment:
| Q |
20 |
acataggactcggggtccatacaaaatggtgcctcattggtgaaggctttctatttttccttctatcaagcaaagggtgagtgaccccacagtgacatat |
119 |
Q |
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| T |
34332006 |
acataggactcggggtccatacaaaatggtgcctcattggtgaaggctttctatttttccttctatcaagcaaagggtgggtgaccccacagtgacatat |
34331907 |
T |
|
| Q |
120 |
caagaaatcttgtattagtaggaagcgtgatcaagctagtagcaccaatgttgcaagctttaattaagctataaggtcatgtgcatcatgcatgtgcaag |
219 |
Q |
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| T |
34331906 |
caagaaatcttgtattagtaggaagcgtgatcaagctagtagcaccaatgttgcaagctttaattaagctataaggtcatgtgcatcatgcatgtgcaag |
34331807 |
T |
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| Q |
220 |
tgcaacaaaacaaaattgtaacgatgtatcaatttttgatcattcatgagtgagtgactgagttttgatcatcaatcatcatggtcatgcctaggcaaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34331806 |
tgcaacaaaacaaaattgtaacgatgtatcaatttttgatcattcattcatgagtgagtgagttttgatcatcaatcatcatggtcatgcctaggcaaaa |
34331707 |
T |
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| Q |
320 |
ttaaagggtttgccacgttcgtgatgggaaatatcactgcaagacttgtctaatttatcatcataaacaacacttgcattatactctaaagtccaaacaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34331706 |
ttaaagggtttgccacgttcgtgatgggaaatatcactgcaagacttgtctaatttatcatcataaacaacacttgcattatactctaaagtccaaacaa |
34331607 |
T |
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| Q |
420 |
aatgaacctcgtgcctatg |
438 |
Q |
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| T |
34331606 |
aatgaacctcgtgcctatg |
34331588 |
T |
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